RNA id: XM_036990336.1


Basic Information

Item Value
RNA id XM_036990336.1
length 2079
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC118966743
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9428517 ~ 9436879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATTTAATCCGGTTTCGGCATGAGAAAAGTATTAATCGCAAATTCCAGCACTAACGGATACCGGGAAATAGAAATATGAGAACCGGTCACGAATGCGGAGCCACGCCCTAAAATAACATGTGACCACAAGGCGTTTGTGACACATTCATGCGTTCCAACTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTGCCCTTCAGAAAGTAGCTGATTCTTGTACTCTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGGTAGGCCTAAACTGTAATAAGATATACCTTAAAGACTGCTTGTGTTTAATCCTGAATCCAGTTGCCCCTCTTGTACTGGGATAAAACAATAGGCAAGCCATGAACCTTATGGAGGAGTACATGTGTTTTGTAGACACACCTGGGTTCTAGACTGGCTGAGGTAAACATTTTAGGAAAGCCTGGGTTTTTAATATCGAAGTCATTCTAAGGGGTAGGTTTGACAAAGcaaatgagtgagtgagtcttTGACATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttcgattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCTCATATAAAATAtgtatttgatgactttattatttcattccaagtcatcaactcatctctatagagctgctgcttaTCCTGTCTGACAAAACCACTATTTTGGTAGTTCTTCTAAGTAAATAAGACCTACTTTTATGAACGCTGAACACCAACTGTCAATCACTTAGGTCATGTATTTCCAGGTAGAGAATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGggcgtgcaatggattatggGAATTAATTGCCGTATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9887 lncRNA upstream 62058 9366476 ~ 9367099 (+) True G8075
TU9838 lncRNA upstream 113733 9312415 ~ 9315424 (+) False G8032
TU9839 lncRNA upstream 113733 9312415 ~ 9315424 (+) False G8032
TU9840 lncRNA upstream 113733 9312415 ~ 9315424 (+) True G8032
TU9836 lncRNA upstream 125047 9303962 ~ 9304110 (+) True G8031
TU9955 lncRNA downstream 51436 9483228 ~ 9483574 (+) True LOC110510917
TU9964 lncRNA downstream 85063 9516855 ~ 9557160 (+) True G8142
TU9967 lncRNA downstream 88995 9520787 ~ 9561179 (+) True G8143
TU9968 lncRNA downstream 94704 9526496 ~ 9677481 (+) True G8144
TU9981 lncRNA downstream 141853 9573645 ~ 9574529 (+) True G8157
XM_021614129.2 mRNA upstream 129092 9240119 ~ 9300065 (+) False psmd1
XM_021614202.2 mRNA upstream 129092 9240119 ~ 9300065 (+) False psmd1
XM_021614254.2 mRNA upstream 129092 9240119 ~ 9300065 (+) True psmd1
XM_021614393.2 mRNA upstream 207749 9218658 ~ 9221408 (+) True LOC110531147
XM_036989433.1 mRNA upstream 246075 9171968 ~ 9183082 (+) True LOC110531220
XM_036933221.1 mRNA downstream 19140 9450932 ~ 9460358 (+) False LOC118966784
XM_036990485.1 mRNA downstream 20980 9452772 ~ 9460358 (+) False LOC118966784
XM_036990444.1 mRNA downstream 21424 9453216 ~ 9460358 (+) False LOC118966784
XM_036933266.1 mRNA downstream 21525 9453317 ~ 9460358 (+) False LOC118966784
XM_036933308.1 mRNA downstream 21939 9453731 ~ 9460358 (+) False LOC118966784
TU8596 other upstream 1173279 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1198922 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1392003 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1543250 7885391 ~ 7885907 (+) True G6518
TU7952 other upstream 1703548 7725046 ~ 7725609 (+) True G6434
TU9946 other downstream 27156 9458948 ~ 9459953 (+) True LOC118966784
TU10089 other downstream 551983 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 553590 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 709452 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 2044872 11476664 ~ 11514382 (+) True LOC110523899

Expression Profile