RNA id: TU9955


Basic Information

Item Value
RNA id TU9955
length 218
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC110510917
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9481039 ~ 9483610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9887 lncRNA upstream 116129 9366476 ~ 9367099 (+) True G8075
TU9838 lncRNA upstream 167804 9312415 ~ 9315424 (+) False G8032
TU9839 lncRNA upstream 167804 9312415 ~ 9315424 (+) False G8032
TU9840 lncRNA upstream 167804 9312415 ~ 9315424 (+) True G8032
TU9836 lncRNA upstream 179118 9303962 ~ 9304110 (+) True G8031
TU9964 lncRNA downstream 33281 9516855 ~ 9557160 (+) True G8142
TU9967 lncRNA downstream 37213 9520787 ~ 9561179 (+) True G8143
TU9968 lncRNA downstream 42922 9526496 ~ 9677481 (+) True G8144
TU9981 lncRNA downstream 90071 9573645 ~ 9574529 (+) True G8157
TU9982 lncRNA downstream 92262 9575836 ~ 9788175 (+) True G8158
XR_005034203.1 mRNA upstream 5969 9476688 ~ 9477259 (+) True LOC118936726
XM_036990390.1 mRNA upstream 11905 9464046 ~ 9471323 (+) True LOC118966781
XM_036933221.1 mRNA upstream 22870 9450932 ~ 9460358 (+) False LOC118966784
XM_036990485.1 mRNA upstream 22870 9452772 ~ 9460358 (+) False LOC118966784
XM_036990444.1 mRNA upstream 22870 9453216 ~ 9460358 (+) False LOC118966784
XR_005034212.1 mRNA downstream 5376 9488950 ~ 9489521 (+) True LOC118936730
XM_036933356.1 mRNA downstream 9747 9493321 ~ 9496279 (+) True LOC118936706
XM_036933753.1 mRNA downstream 22314 9505888 ~ 9513475 (+) False LOC118936734
XM_036933839.1 mRNA downstream 22314 9505888 ~ 9513475 (+) False LOC118936734
XM_036933911.1 mRNA downstream 23380 9506954 ~ 9513475 (+) False LOC118936734
TU9946 other upstream 23275 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1227350 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1252993 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1446074 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1597321 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 500201 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 501808 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 657670 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1993090 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3755039 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile