RNA id: XM_036934404.1


Basic Information

Item Value
RNA id XM_036934404.1
length 5215
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118936861
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9527471 ~ 9534999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCACAAGGCGTTTGTGACGCATTTATGCGTTCCAATTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTTCCCTTCAGAAAGTAGCTGATTCTTGTACTTTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGGTAGGCCTAAACTGTAATAAGATATACCTTAAAGACTGCTTGTGTTTAATCCTGAATCCAGTTGCCCCTCTTGTACTGGGATAAAACAATAGGCAAGCCATGAACCTTATGGAGGAGTACATGTGTTTTGTAGACACACCTGGGTTCTAGACTGGCTGAGGTAAACATTTTAGGAAAGCCTGGGTTTTTAATATCGAAGTCATTCTAAGGGGTAGGTTTGACAAAGcaaatgagtgagtgagtcttTGACATGAAGACAGTGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTGTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGTATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCTGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCAAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATGGTGAGAGAGCTGGCTTTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTATGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGACAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTCAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACAGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGAAATGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCGAAAGAACAGGATCTGGTCTGCTACTACTAGTTTATATAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGGTCAGACGTACAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCTGAGAAAGGAGTGAGTGAAGTCCTCTCTAGATCATTTAACGTTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAacacttggttcaatcccaatATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTAGACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTCCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGATGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTTTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATGTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCAGAGCAAGCCAGAGGATAGTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagtgACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGAACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGACTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9955 lncRNA upstream 43897 9483228 ~ 9483574 (+) True LOC110510917
TU9887 lncRNA upstream 160372 9366476 ~ 9367099 (+) True G8075
TU9838 lncRNA upstream 212047 9312415 ~ 9315424 (+) False G8032
TU9981 lncRNA downstream 38646 9573645 ~ 9574529 (+) True G8157
TU9982 lncRNA downstream 40837 9575836 ~ 9788175 (+) True G8158
TU9990 lncRNA downstream 59849 9594848 ~ 9647813 (+) True LOC118937346
TU9992 lncRNA downstream 67024 9602023 ~ 9602478 (+) True G8167
TU9988 lncRNA downstream 88068 9623067 ~ 9623904 (+) True LOC118937363
XM_036933753.1 mRNA upstream 13996 9505888 ~ 9513475 (+) False LOC118936734
XM_036933839.1 mRNA upstream 13996 9505888 ~ 9513475 (+) False LOC118936734
XM_036933911.1 mRNA upstream 13996 9506954 ~ 9513475 (+) False LOC118936734
XM_036933975.1 mRNA upstream 13996 9507022 ~ 9513475 (+) True LOC118936734
XM_036933356.1 mRNA upstream 31192 9493321 ~ 9496279 (+) True LOC118936706
XM_036989298.1 mRNA downstream 9338 9544337 ~ 9551047 (+) True LOC118966312
XM_021595311.2 mRNA downstream 17261 9552260 ~ 9555778 (+) True LOC110517099
XM_036935798.1 mRNA downstream 29493 9564492 ~ 9572580 (+) False LOC110522382
XM_036935759.1 mRNA downstream 30394 9565393 ~ 9572580 (+) False LOC110522382
XM_036935836.1 mRNA downstream 30880 9565879 ~ 9572580 (+) False LOC110522382
TU9946 other upstream 67518 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1271593 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1297236 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1490317 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1641564 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 448776 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 450383 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 606245 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1941665 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3703614 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile