RNA id: XM_036935356.1


Basic Information

Item Value
RNA id XM_036935356.1
length 4747
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC118937339
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9637743 ~ 9668473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTGACGCATTTATGCGTTCCAATTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTGCCCTTCAGAAAGTAGCTGATTCTTGTACTCTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATTTTGCCAGATGGAAGAAAATAATAAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAAACACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTCTGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGTATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaggaagaagtgCAGGAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTTACCTGTGTACAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAAGACTGCAATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGAAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAACGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCTACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACTAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGAACAGTACCTTCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACGTATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCATTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCAATACAAAGGGTTCCAAGAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCACATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9988 lncRNA upstream 13839 9623067 ~ 9623904 (+) True LOC118937363
TU9992 lncRNA upstream 35265 9602023 ~ 9602478 (+) True G8167
TU9981 lncRNA upstream 63214 9573645 ~ 9574529 (+) True G8157
TU9967 lncRNA upstream 76564 9520787 ~ 9561179 (+) True G8143
TU9964 lncRNA upstream 80583 9516855 ~ 9557160 (+) True G8142
TU10009 lncRNA downstream 7745 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA downstream 20437 9688910 ~ 9690104 (+) True G8176
TU10018 lncRNA downstream 37723 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA downstream 37723 9706196 ~ 9726596 (+) True G8191
TU10036 lncRNA downstream 103591 9772064 ~ 9794426 (+) False G8200
XM_036935700.1 mRNA upstream 14053 9613655 ~ 9623690 (+) False LOC118937363
XM_036936912.1 mRNA upstream 28439 9606630 ~ 9609304 (+) False LOC118937622
XR_005034856.1 mRNA upstream 28439 9606630 ~ 9609304 (+) True LOC118937622
XM_036935428.1 mRNA upstream 42502 9586463 ~ 9595241 (+) False LOC118937346
XM_036935471.1 mRNA upstream 42502 9586463 ~ 9595241 (+) False LOC118937346
XM_036934608.1 mRNA downstream 9321 9677794 ~ 9705942 (+) False LOC118937070
XM_036934605.1 mRNA downstream 10293 9678766 ~ 9705942 (+) False LOC118937070
XM_036934606.1 mRNA downstream 10297 9678770 ~ 9686242 (+) False LOC118937070
XM_036934628.1 mRNA downstream 10297 9678770 ~ 9705314 (+) False LOC118937070
XM_036935638.1 mRNA downstream 28550 9697023 ~ 9726523 (+) False LOC118937357
TU9946 other upstream 177790 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1381865 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1407508 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1600589 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1751836 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 315302 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 316909 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 472771 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1808191 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3570140 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile