RNA id: XM_036934688.1


Basic Information

Item Value
RNA id XM_036934688.1
length 4373
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118937070
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9677794 ~ 9705942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGTATGTTCTGTTTTCTTTGGTACTATCACACCTTCAAGGAAATAGGATCAAATTAGAAACTGATCAATCGGAAAAAAATGTTCAGTGCTAGAAAAGTTGTCACATTGCAATTTTGCCAAAACAACTGACACAAAGCAAGTATAACTTCACGATCAggcaaataattaaataaaaactaTTCTGCCACGCATCCTGATATGACAACATTTATAACAATATTGTTTTCAGGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTATCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAAAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGACCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAACAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGTTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATTGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTATTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCATCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAAGACTGAAATATCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGATGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCGCCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGGCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACATCTACAACAGTCTGCAAAGTAAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACGTATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGTAAACGATGCCTGTGTGGACATTCTGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCATTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGGGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAATAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACAAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACcaaattatttaaataaattcctcattataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10009 lncRNA upstream 612 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA upstream 9051 9688910 ~ 9690104 (+) True G8176
TU9968 lncRNA upstream 21674 9526496 ~ 9677481 (+) True G8144
TU9990 lncRNA upstream 51342 9594848 ~ 9647813 (+) True LOC118937346
TU9988 lncRNA upstream 75251 9623067 ~ 9623904 (+) True LOC118937363
TU10018 lncRNA downstream 254 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA downstream 254 9706196 ~ 9726596 (+) True G8191
TU10036 lncRNA downstream 66122 9772064 ~ 9794426 (+) False G8200
TU10034 lncRNA downstream 87901 9793843 ~ 9933555 (+) True G8200
TU10063 lncRNA downstream 153462 9859404 ~ 9915393 (+) True G8225
XM_036934606.1 mRNA upstream 12913 9678770 ~ 9686242 (+) False LOC118937070
XM_036935247.1 mRNA upstream 30682 9638652 ~ 9668473 (+) False LOC118937339
XM_036935597.1 mRNA downstream 12538 9718480 ~ 9726417 (+) False LOC118937357
XM_036935532.1 mRNA downstream 12931 9718873 ~ 9726418 (+) False LOC118937357
XM_036936416.1 mRNA downstream 25062 9731004 ~ 9737800 (+) True LOC118937403
XM_036936244.1 mRNA downstream 35963 9741905 ~ 9756269 (+) False LOC110510916
XM_036936289.1 mRNA downstream 36403 9742345 ~ 9756269 (+) False LOC110510916
TU9946 other upstream 239202 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1443277 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1468920 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1662001 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1813248 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 277833 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 279440 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 435302 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1770722 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3532671 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile