RNA id: XM_036935532.1


Basic Information

Item Value
RNA id XM_036935532.1
length 5043
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118937357
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9676218 ~ 9726523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAGATTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGACTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAATTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTGCAGGACAGCCTGCAATGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGACAGCATGGTGAGAGAGCTGGCTTTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATTAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGCGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGACAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATTCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTAATCTCAGAGCTTCTGGTCTTGTACAACACTGAGATGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCAAAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTAATCTCTAGATCATTTAACATTGCGGAGGAAGGTACAACAGATAAGTACATCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGTGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCACGCTCTTCTATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTTGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGTtaggaaattgaaaaaaatcatTTCCACTTGGACCATCCACATTTTCAGTCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAATGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAAAGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAAACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACCAAATTTATTTAATTAAATTCCTCATGATAAACAACGAGAGCATTCATTTGTTCAGATGAGAATCtaatcgtattggtcacatacgccgAAAACAACTGTGAGATGCTTTAttacgagcccattcccaacaatgcagagttaaaaagtaagaaaatattttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgggaggtagttgaggtaatacagtatgtacatgtaggtaagggtaaaagtgactaggcaatcaggatagataataaacacagtaGCAGCAGCTAGTGTGAAAGTCGGTCAGTGTcacagtgaatgtgtgggtagagtgtagTGAGTGTGCATCGAGCCAATTCAAGAGAGTCAGTGGAAAACAATTAGAAAAATACATCAATAAccaagggggtcaatgcaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10009 lncRNA upstream 20330 9676218 ~ 9698543 (+) True LOC118937357
TU10001 lncRNA upstream 28769 9688910 ~ 9690104 (+) True G8176
TU9968 lncRNA upstream 41392 9526496 ~ 9677481 (+) True G8144
TU9990 lncRNA upstream 71060 9594848 ~ 9647813 (+) True LOC118937346
TU9988 lncRNA upstream 94969 9623067 ~ 9623904 (+) True LOC118937363
TU10036 lncRNA downstream 45646 9772064 ~ 9794426 (+) False G8200
TU10034 lncRNA downstream 67425 9793843 ~ 9933555 (+) True G8200
TU10063 lncRNA downstream 132986 9859404 ~ 9915393 (+) True G8225
TU10069 lncRNA downstream 165999 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA downstream 181388 9907806 ~ 9925501 (+) True LOC118937372
XM_036934608.1 mRNA upstream 12931 9677794 ~ 9705942 (+) False LOC118937070
XM_036936416.1 mRNA downstream 4586 9731004 ~ 9737800 (+) True LOC118937403
XM_036936244.1 mRNA downstream 15487 9741905 ~ 9756269 (+) False LOC110510916
XM_036936289.1 mRNA downstream 15927 9742345 ~ 9756269 (+) False LOC110510916
XM_036936326.1 mRNA downstream 16710 9743128 ~ 9756269 (+) True LOC110510916
XM_036936590.1 mRNA downstream 31520 9757938 ~ 9779379 (+) False LOC118937415
TU9946 other upstream 258920 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1462995 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1488638 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1681719 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1832966 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 257357 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 258964 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 414826 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1750246 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3512195 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile