RNA id: XM_036989300.1


Basic Information

Item Value
RNA id XM_036989300.1
length 4267
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110515163
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9819217 ~ 9826268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCCACAAAATCAAACAAATGGTACTGAACTGATGACAAAATCATGTTTAGAAATTGTAGTAGctatttatgttgttgttgttgcttaatgacattgcgaatatcatattttttGTCATTTAACTACCGGTATTTATTTAATCCGGTTTCGGCATGAGAAAAGTATTAATCGCAAATTCCAGCACTAACGGATACCGGGAAAAATAAATATGAGAACCGGTCACGAATGCGGAGCCACGCCCTAAAATAACATGTGACCACAAGGCGTTTGTGACGCATTCATGCGTTCCAATTTTGTCataattgtctgtaggttctaaaTTGCTTATGAGCTTGGCTTCCCTTCAGAAAGTAGCTGATTATTGTACTCTACAGCTGTATTTTCCTACAGTTACTAATAATACTAGCAACAAAACAGATTTCATTCCTTAAAATGATATTGCCAGATGGAAGAAAATAATAAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGAAGCAAAGCAGCACTGTggaaaccacagaagaagagagCCTCAACAGTGTGAAAAATCTTGAGTCTTTTTCACTGATTATCAACTTCCTGCAGAACCTAACTGAGGAGCAATGGAGTAGGATTCGTAATGGCATTTCTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCAAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGTGCCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGatcaggaagaggaagaagagcagGAATCACAACAACCTAAGTTCAAGGAGATGTACCTGACTAAGGAGATGGGCAGTCTGGGCAGTGGAAGCTACTGCCCAAAACCATTGCCCAAGCCAGCCATGAGaaccTCTCTGTCTGATGTGCAGAAGAAGACAACCAACTCTGACTCGCTACAAGTCCTTTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTCCGAAGATGACCCCTGCTGTAATGGCAGAAGTGATTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTCAAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACCAACATAATTTGCTGAAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGCTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGGCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATTCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCGTCTCAGAGCTTCTGGTCTTGTACAACACTGAGGTGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGACTTCTCTATTGAGAGACAACAATTTGTAGAGGGCGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGGCCTCATCACCAATAGTATATGAGTTCCCCTGTCAAATTGAGGAGAGCAGAAGTAAGGCCACAGCTTTGACCAGTCTATTAGATTGCATGAAAAAACTCTCAAGTGAGGAAttcaagagagacaccactcaaGCAGTGAGTGGGTTCCTAGTTAAAAAGTCCAACAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAAGTCTTGTTCCGTTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCGAAAGAACAGGATCTGGTCTGCTACTACTAGTTTATATAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCAGAGGTCAGACGTGCAGAGAAGAATGTCTAGCCGTACACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAATGACATCTCCTTGTCAAGGTCCCGAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTATGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACAATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTTCTTCTCATCCTGACAACCTCCGATCTGCTAGACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10036 lncRNA upstream 24791 9772064 ~ 9794426 (+) False G8200
TU10018 lncRNA upstream 33655 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA upstream 92621 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 120674 9676218 ~ 9698543 (+) True LOC118937357
TU10063 lncRNA downstream 33136 9859404 ~ 9915393 (+) True G8225
TU10069 lncRNA downstream 66149 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA downstream 81538 9907806 ~ 9925501 (+) True LOC118937372
TU10076 lncRNA downstream 101571 9927839 ~ 9947260 (+) True G8238
TU10105 lncRNA downstream 181742 10008010 ~ 10008505 (+) True G8263
XM_036936178.1 mRNA upstream 12573 9802456 ~ 9806644 (+) True LOC118936500
XM_036989299.1 mRNA upstream 16766 9799673 ~ 9802451 (+) True LOC118966328
XM_036936625.1 mRNA upstream 39050 9757938 ~ 9780167 (+) False LOC118937415
XM_036936590.1 mRNA upstream 39838 9757938 ~ 9779379 (+) False LOC118937415
XM_036936517.1 mRNA upstream 51527 9758134 ~ 9767690 (+) True LOC118937415
XM_036934788.1 mRNA downstream 11260 9837528 ~ 9845115 (+) False LOC110515172
XM_036934845.1 mRNA downstream 11260 9837528 ~ 9845115 (+) False LOC110515172
XM_036934914.1 mRNA downstream 11273 9837541 ~ 9845115 (+) False LOC110515172
XM_036934969.1 mRNA downstream 11273 9837541 ~ 9845115 (+) True LOC110515172
XM_036934147.1 mRNA downstream 34884 9861152 ~ 9869103 (+) False LOC118936775
TU9946 other upstream 359264 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1563339 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1588982 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1782063 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1933310 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 157507 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 159114 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 314976 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1650396 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3412345 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile