RNA id: XM_036934293.1


Basic Information

Item Value
RNA id XM_036934293.1
length 4167
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC118936775
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9861152 ~ 9869107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATGGAGGGGGATTCGTGAGGGTATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATGGTGAGAGAGCTGGCTTTTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCACCATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTATGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGACAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTCAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACAGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGAAATGTCAAAGGAGGACCCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCGAAAGAACAGGATCTGGTCTGCTACTACTAGTTTATATAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGGTCAGACGTACAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCTGAGAAAGGAGTGAGTGAAGTCCTCTCTAGATCATTTAACGTTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAacacttggttcaatcccaatATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTAGACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTCCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGATGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTTTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATGTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCAGAGCAAGCCAGAGGATAGTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagtgACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGAACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGACTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10036 lncRNA upstream 68304 9772064 ~ 9794426 (+) False G8200
TU10018 lncRNA upstream 77168 9706196 ~ 9785562 (+) False G8191
TU10019 lncRNA upstream 136134 9706196 ~ 9726596 (+) True G8191
TU10009 lncRNA upstream 164187 9676218 ~ 9698543 (+) True LOC118937357
TU10069 lncRNA downstream 23314 9892417 ~ 9931446 (+) True G8231
TU10072 lncRNA downstream 38703 9907806 ~ 9925501 (+) True LOC118937372
TU10076 lncRNA downstream 58736 9927839 ~ 9947260 (+) True G8238
TU10105 lncRNA downstream 138907 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 139917 10009020 ~ 10009350 (+) True G8264
XM_036934788.1 mRNA upstream 17615 9837528 ~ 9845115 (+) False LOC110515172
XM_036934845.1 mRNA upstream 17615 9837528 ~ 9845115 (+) False LOC110515172
XM_036934914.1 mRNA upstream 17615 9837541 ~ 9845115 (+) False LOC110515172
XM_036934969.1 mRNA upstream 17615 9837541 ~ 9845115 (+) True LOC110515172
XM_036938257.1 mRNA upstream 34270 9826009 ~ 9828460 (+) True LOC110511657
XM_036934597.1 mRNA downstream 9623 9878726 ~ 9889811 (+) True LOC110510777
XM_036936004.1 mRNA downstream 31758 9900861 ~ 9907885 (+) False LOC118937372
XM_036935940.1 mRNA downstream 48052 9917155 ~ 9924757 (+) True LOC118937370
XM_036989302.1 mRNA downstream 68062 9937165 ~ 9945082 (+) True LOC118966382
XM_036935035.1 mRNA downstream 87575 9956678 ~ 9964323 (+) False LOC118937321
TU9946 other upstream 402777 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1606852 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1632495 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1825576 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 1976823 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 114672 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 116279 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 272141 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1607561 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3369510 13238613 ~ 13259996 (+) True LOC110538561