RNA id: XM_036935135.1


Basic Information

Item Value
RNA id XM_036935135.1
length 4329
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118937321
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9956678 ~ 9964323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAAAAATGTCATTGCTAGAAAAGTTGTCACATTGCAATTTTGCCAAAACAACTGACACAAAGCAAGTATAACTTCACGATCAggcaaataattaaataaaaacaattctgcCACGCATCCTGATATGACAACATTTATAACAATATTGTTTTCAGGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGGTAAGATCATGTTACTGACAATTTAATCAGATTACCATGAAAACTCTGCCTAATGTTTAACCTTGTTCATAAGCTTTAAAAAGACGCACtatgcaacattttaaaacacttctTCTGTTTCTGGAATACAGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTACAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGGCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGCAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAAGACTGCAATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcaaaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAACGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCTACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACTAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGAACAGTACCTTCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGGATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACGTATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCACGCTCTTCTATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAAATGGACAGGGTGCTTCTCATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCATTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGAAGCAGCCAAAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCGTGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAATAATGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACAAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACcaaattatttaaataaattcctcattataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10076 lncRNA upstream 10451 9927839 ~ 9947260 (+) True G8238
TU10034 lncRNA upstream 24156 9793843 ~ 9933555 (+) True G8200
TU10105 lncRNA downstream 43687 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 44697 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 46693 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 47527 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 86718 10051041 ~ 10053076 (+) True G8253
XM_036989302.1 mRNA upstream 12629 9937165 ~ 9945082 (+) True LOC118966382
XM_036935940.1 mRNA upstream 32954 9917155 ~ 9924757 (+) True LOC118937370
XM_036936004.1 mRNA upstream 49826 9900861 ~ 9907885 (+) False LOC118937372
XM_036934597.1 mRNA upstream 67900 9878726 ~ 9889811 (+) True LOC110510777
XM_036934214.1 mRNA upstream 88608 9862789 ~ 9869103 (+) True LOC118936775
XM_021592072.2 mRNA downstream 16204 9980527 ~ 9982610 (+) False LOC110510920
XM_036936075.1 mRNA downstream 16213 9980536 ~ 9987695 (+) False LOC110510920
XM_036938569.1 mRNA downstream 48378 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA downstream 48383 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA downstream 62744 10027067 ~ 10048677 (+) False LOC110533060
TU9946 other upstream 497758 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1701833 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1727476 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1920557 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 2071804 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 19452 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 21059 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 176921 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1512341 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3274290 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile