RNA id: XM_021592072.2


Basic Information

Item Value
RNA id XM_021592072.2
length 1496
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC110510920
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9980527 ~ 9991542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGACAGTGGTTAGGTTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAAGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAAAAGCTTGCCGGCTTGTGTCTGAGAATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattccaagtcatcaactcatctctatagagctgctgcttattctgtctgacaaaatcactattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGGATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGggcgtgcaatggattatggGAATTAATTGCCGTATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10076 lncRNA upstream 33267 9927839 ~ 9947260 (+) True G8238
TU10034 lncRNA upstream 46972 9793843 ~ 9933555 (+) True G8200
TU10105 lncRNA downstream 25400 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 26410 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 28406 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 29240 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 68431 10051041 ~ 10053076 (+) True G8253
XM_036935035.1 mRNA upstream 16204 9956678 ~ 9964323 (+) False LOC118937321
XM_036935087.1 mRNA upstream 16204 9956678 ~ 9964323 (+) False LOC118937321
XM_036935135.1 mRNA upstream 16204 9957711 ~ 9964323 (+) False LOC118937321
XM_036935193.1 mRNA upstream 16204 9957711 ~ 9964323 (+) True LOC118937321
XM_036989302.1 mRNA upstream 35445 9937165 ~ 9945082 (+) True LOC118966382
XM_036938569.1 mRNA downstream 30091 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA downstream 30096 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA downstream 44457 10027067 ~ 10048677 (+) False LOC110533060
XM_036938466.1 mRNA downstream 44459 10027069 ~ 10048677 (+) False LOC110533060
XM_036938528.1 mRNA downstream 44810 10027420 ~ 10048677 (+) False LOC110533060
TU9946 other upstream 520574 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1724649 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1750292 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1943373 8036617 ~ 8037154 (+) True G6807
TU8049 other upstream 2094620 7885391 ~ 7885907 (+) True G6518
TU10089 other downstream 1165 9983775 ~ 9984464 (+) False LOC110510920
TU9934 other downstream 2772 9985382 ~ 9991542 (+) True LOC110510920
TU10501 other downstream 158634 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1494054 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3256003 13238613 ~ 13259996 (+) True LOC110538561

Expression Profile