RNA id: TU9934



Basic Information


Item Value
RNA id TU9934
length 576
RNA type TUCP
GC content 0.53
exon number 2
gene id LOC110510920
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9980527 ~ 9991542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCATTTGTTGTCATATgttgactgttttgctagcacagactgtaaTATGTTCTGCGATTCATCCAcatgcattgaggagtataccacctcagtcacaggCTACATCAATAAGTGGATCGACAACGTCGtgtccacagtgaccgtatgtacatatccccgacagaagccatggattacaggcaacatccacaccgcgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgaaatcctgctatgccctcagactaaccatcaaacaggcaaagtggttggttaggtcagggtgtgactagggtgggcaatctaggtgatctatttctttgtttggactggtatggttcccaatcagaggcagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10076 lncRNA upstream 38122 9927839 ~ 9947260 (+) True G8238
TU10034 lncRNA upstream 51827 9793843 ~ 9933555 (+) True G8200
TU10105 lncRNA downstream 16468 10008010 ~ 10008505 (+) True G8263
TU10106 lncRNA downstream 17478 10009020 ~ 10009350 (+) True G8264
TU10107 lncRNA downstream 19474 10011016 ~ 10011230 (+) True G8265
TU10108 lncRNA downstream 20308 10011850 ~ 10012067 (+) True G8266
TU10094 lncRNA downstream 59499 10051041 ~ 10053076 (+) True G8253
XM_021592072.2 mRNA upstream 2772 9980527 ~ 9982610 (+) False LOC110510920
XM_036935035.1 mRNA upstream 21059 9956678 ~ 9964323 (+) False LOC118937321
XM_036938569.1 mRNA downstream 21159 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA downstream 21164 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA downstream 35525 10027067 ~ 10048677 (+) False LOC110533060
XM_036938466.1 mRNA downstream 35527 10027069 ~ 10048677 (+) False LOC110533060
XM_036938528.1 mRNA downstream 35878 10027420 ~ 10048677 (+) False LOC110533060
TU10089 other upstream 918 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 525429 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1729504 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1755147 8229297 ~ 8230235 (+) True LOC110501328
TU8398 other upstream 1948228 8036617 ~ 8037154 (+) True G6807
TU10501 other downstream 149702 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1485122 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3247071 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3637321 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3638494 13630036 ~ 13631890 (+) False G12410

Expression Profile