RNA id: XM_036938528.1


Basic Information

Item Value
RNA id XM_036938528.1
length 1679
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110533060
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10012701 ~ 10048677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGTTTTAGAAATAGGTCATATTAAAACAAACTACATCTCTGTGAGTGCACCCCTCGGCGCACTGTTGCCATGTTCCCAGTTTCCTCATGGGTGTGGTGATTAGATTGGCTGGTGAACATTCTGTCAAATCCTGACCGAGTTGCGCGAGCCCCTGGCCCTTTAAATCAGTTAAATTGTCTTAAAATTAATACCGCTATCTTGACATTTCTTTCACAACCGAGACCATGTTTGCCATTTGAAAACGGACTATCGTAACACTGATTGGAACGACGTGGACAGTCCCAAAAAAATCCAGTTTCAGTATTCCTGAACACATCACAGAGGGACAATGAGTGAGCTGGAACAGTTACGGCAGGAAGCAGAGCAACTACGCAATCAAATccgggaTGCTAGGAAAGCCTGTAGTGACTCCACTCTTTCACAGATCACAGCTGGTCTGGACTCAGTGGGCCGGATACAGATGAGGACGCGGCGTACTCTCAGGGGCCACCTCGCCAAGATCTATGCAATGCACTGGGGCACCGACTCCAGGTTACTTGTAAGCGCCTCCCAAGATGGCAAATTAATCATTTGGGACAGTTACACAACTAACAAGATGCATGCCATCCCGCTGCGCTCCTCCTGGGTGATGACCTGTGCCTACGCGCCCTCTGGGAACTACGTGGCGTGCGGAGGCCTGGACAACATCTGTTCTATCTACAGCCTGAAGACCCGCGAGGGAAACGTGCGCGTCACCCGCGAGCTACCCggacacacagGCTATTTGTCTTGCTGTCGTTTCCTGGATGACAACCAGATTGTCACTAGTTCAGGGGACACAACCTGTGCTTTATGGGACATCGAGACGGGTCAGATGGCCACCAGCTTTACGGGCCACACGGGGGACGTGATGAGCCTGTCCCTTAGTCCCGACTTCAAGACCTTTGTGTCGGGGGCCTGTGACGCCTCCTCCAAGCTGTGGGATGTCCGGGACGGCATGTGCAGGCAGTCCTTCACTGGCCACGTGTCCGACATTAACGCTGTCTGCTTCTTCCCCAACGGCAACGCCTTTACCACGGGCTCGGACGACGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAAGAGCTGATGATGTACTCGCACGACAACATAATCTGCGGCATCACCTCAGTGGCCTTCTCCAAGAGTGGTCGTCTGCTGCTGGCCGGCTACGACGACTTCAACTGCAACGTGTGGGACACCCTCAAGGCAGAGCGTGCAGGTGTCCTGGCCGGTCACGACAACAGGGTGAGCTGTTTAGGCGTGACAGACGACGGCATGGCTGTAGCCACGGGCTCATGGGACAGTTTCCTCAGAATCTGGAATTAAACCCTCCAGCTCacgtcctcctctctcccccctccaccattCCACCCACTCATACTGCTGGGCTTGGACTTGAGGGTGAACACTGTCTCCCATCACCAACGTCCCGTCCACCACCATCCACAGCCAGAGTAACAACtctttctacattttttttttttactcacttATTAATTACACAGAGCTCTCAGTACCCACAGTTAGAATGACCAATCAAAGAAaaatgaaaaagaaaaaaaaacaacctcGCATCCCCCTCTTGTTTTTGGACAGGTGAAGCACTAGAGCGCATGTTACCGTGGTTACCGCCAAATTAGAGGACAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10108 lncRNA upstream 15353 10011850 ~ 10012067 (+) True G8266
TU10107 lncRNA upstream 16190 10011016 ~ 10011230 (+) True G8265
TU10106 lncRNA upstream 18070 10009020 ~ 10009350 (+) True G8264
TU10105 lncRNA upstream 18915 10008010 ~ 10008505 (+) True G8263
TU10076 lncRNA upstream 80160 9927839 ~ 9947260 (+) True G8238
TU10094 lncRNA downstream 2364 10051041 ~ 10053076 (+) True G8253
TU10148 lncRNA downstream 32491 10081168 ~ 10083667 (+) True G8295
TU10165 lncRNA downstream 70333 10119010 ~ 10134267 (+) True G8304
TU10493 lncRNA downstream 88657 10137334 ~ 10137566 (+) True G8600
TU10555 lncRNA downstream 171667 10220344 ~ 10222076 (+) True G8651
XM_036936075.1 mRNA upstream 39725 9980536 ~ 9987695 (+) False LOC110510920
XM_021592072.2 mRNA upstream 44810 9980527 ~ 9982610 (+) False LOC110510920
XM_036935087.1 mRNA upstream 63097 9956678 ~ 9964323 (+) False LOC118937321
XM_036938825.1 mRNA downstream 38623 10087300 ~ 10096757 (+) True ftsj3
XM_036939042.1 mRNA downstream 48266 10096943 ~ 10101637 (+) False asb3
XM_021617595.2 mRNA downstream 48267 10096944 ~ 10101637 (+) False asb3
XM_021617682.2 mRNA downstream 48267 10096944 ~ 10101637 (+) True asb3
XM_036939156.1 mRNA downstream 55492 10104169 ~ 10107871 (+) False lim2.2
TU9934 other upstream 35878 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 42956 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 567467 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1771542 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1797185 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 92567 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1427987 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3189936 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3580186 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3581359 13630036 ~ 13631890 (+) False G12410

Expression Profile