RNA id: XM_036938825.1


Basic Information

Item Value
RNA id XM_036938825.1
length 3292
RNA type mRNA
GC content 0.51
exon number 21
gene id ftsj3
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 10087300 ~ 10096757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTTCAAACTTATATGTGACGTAAATTTCATGCGCATAGAAGCCACACGTGTTATGTTTTCATGGAGGTGGTTGGTAATCTGCTTCGGTAATTTGTAAATCGTAATATTCCAAAGGAATCACAATTTAAATAATAAGCGATCAACAACACCAGCAAACATGGGGAAGAAACTCAAAGTTGGAAAGACCAGAAAAGATAAATTCTACCACTTAGCAAAGGAAACGGgatATCGTTCACGTTCTTCCTTCAAGCTTATTCAACTGAACCGAAAATTCCAGTTCTTACAGAAAGCCAGGGCTCTGGTGGACTTGTGCGCTGCTCCGGGTGGTTGGTTACAGGTGGCGTCCAAGTTTATGCCTGTCTCCAGTCTTATTATTGGTGTCGACTTGGTCCCAATCAAATCTATCCCCAACGTGGTCGCCCTGACAGAGGACATCACCACAGAGAAATGCCGGCAGGCTCTGAGGAAGGAGCTCCAGACATGGAAGGTGGACGTGGTCCTAAACGATGGAGCTCCAAATGTTGGAGCCAACTGGGTGCATGATGCCTTCTCTCAGGCTCATCTGACCCTGATGGCTCTGAAGCTGGCGTGTGACTTCCTGGCCAAAGGGGGCACGTTTGTCACCAAGGTGTTCCGCTCCAAAGACTACCAGCCACTGCTGTGGATCTTCCAGCAGTTCTTCAAGAAGGTGCAGGCTACCAAGCCCCAGGCCTCCAGAAACGAGTCGGCTGAGATCTTCGTCATCTGCCAAGGCTACCTGGCCCCAGACAAAATTGACAACAAGTTCTTCGACCCCAAACATGCTTTCAAAGAGGTGGAGGTCCAAGCCAAGGCTATCAAAGACCTGGTCCCTCTGAAGAAaccaaagGCGGAGGGATACACAGATGGTGATCTGACCCTGTATCACACCTTCTCAGCGACCGCCTTCCTCAAGGCTGACAACCCTGTGGACTTCCTGAGCAAAGCCAACGAGATCAATTTTGACAACCCTGAGTTGGAGTCTCACGAGGCCACCTCTGACGAGGTCATAGAGTGTTGCCGTGACATCAAGGTTCTGGGCCGCAAGGAGCTCCGTCTGCTGCTGAACTGGAGGTCCAAGCTGAGGAGATACCTGGCTAAGAAGCTAAAGGATGAGGCCAAGCAGCTGGATGAGGACATCAAACTGAGTTCAGGTGAGGAGGCGAGCGAcgcagaggagaagaaagaagagaagaaagaggagaaggagaaaaagaAAATGACAGTGGCTGAAAAGAAGGAAGAAGAGGCCGAgttggaggaggaagagatggagcaGAAACTTGCCGAGCTGAAAGCCGAGGAGGTGGCAGAGCTGAGACGGAAGAAGAAGAAGcttctgaaggagaggaggaagcagagggagagggtggcACTGAAGATGGACCTGCCGGGAGTCTCCATCGCAGATGGCAACGACTCCTCAATGTTCTCCCTCGTTACCATTAACAAGGCCGCGGCTCTGTGTGAGATCACCAAGGGGGACATGAAGTTAGCTGATGCtatggtggaaggagaggaggacctaTACTTCTCTGACGACGGTGACAGTGACGAGGTCTCCCTGGTCTCTGACCTGGACGATGACGACTTGGATGAGATCatagagaaacagaaggagatgGCCAAGGACAAGGCCACCAAGAAAAAAGTGTCCTTCaatgtggagaaggaggaggaggaggaagaagaagggagTGGACTGATAGTGGAgctggagggaaaggaggagaagagagaccgTGAGACCAGCATGTGGTTCAGCAAGGACATCTTCGCTGAACTGGATCTGGACGGAGATGCAGCGAGCGAGCTGCGGCAGACACAGATGCTACAGAACAAGGACCCTACAGCCAAGGGGAAGAAGAGAAAAACCCCAGAGGAGCCTGATACGGCCCAGCCCGAGGGGGAAGAGGCGGGGCCTTCACAGGAAGCTGGGGCAGAGGGGGATAGCGACAGCTACTCTGATGAAGACAACAGCAGTGACGAGGACGATGAGAAGAGTATCGCTCAGATGAAGGCTAAAGGGTCTGGCGGTATCCAAGGAGACGAAGACGGCGACGACTTCCAGGTGGTGCCAGTGGAGAGCAccaGCAAGCGTGCTCGCATCATGAATGCAGAGGGTTTGGCCCTGGGCTGTCAGATCGCGACCTCCAAGAAGAGATCAAGGGACCTGGTTGACGGCTCCTTCCACAGATTTGCCAGCTCGGAGGACCAGTGCGAGGTGCCCGAGTGGTTTGTGGATGACGAGAAGAAACACAGGAATAAGCCTATCCCCGTCACcaaggagatggtggaggagtACAAGGCAAAATGGAAGGAGATCAACGCCAGGCCCATTAAAAGAGTGGCTGAGGCCAAGgccaggaagaagaggaggATGCTGAAGAAGATGGAGTCAGCCAAGAAGAAGGCGGAGGCCGTGGTCAACACAGTGGACATTGGTGAAAGGGAGAAGATGGCCCAGCTAAAGAGTATCTATAAGAAGGCGGGCCTTGgtaaggagaagagggaggtcaCGTACGTCGTGGCCAAGAAGGGCTCTGGTACCAAGAGGGTTCGTCGTCCGGGCGGTGTCAAGGGCCAGTTCAAAGTGGTGGACGGCCGCATGAAGAAGGACATGAGAGGCATGCAGAGGAAAGAGCAGCGTGAGAGAGGGGGCAagaaaggagggaaggggaaaggAGGGGGGGGCAAAGGAAAAGgcagaggtggtggaggaggaggatttAAGGGTGGAAGAGGAGGGATGAAGGGTGGAAAAGGACGTCCTGGCAGGAAATGAGTAAAAGAACACCGCTCTGTCCCCTCCTTTTGTTTTCGGAGGTTAAATTAATTTTCCCCTCCATTTTGTATCTGAGAGTTGTCATATAGGCAAGCTAAGATGGCTGCCACACTGCTGGTTCTGCTACAGTGGAATTGTGGGCAACAGAACTTCCCTGGTGTACTTTGAGACCCTCTACCGAAACAGTGACCGCCGTACTGAAAAGCATGATAAAACAATACAGGTATCCTCCAATCTTTTGGATAAATAAAAAGTGCTGTGTGTACATCTTTCTATGAGAGGATGACGTACTTGCCTTACATCCAGTGTTGACTGAAGCTGTTTCAGTGCACACCCTGAACCACTCTGTAATAAATGGTTTCGATCAAGATTTCACATGAATAGTAATGTTTATTAAAATACATGTGCTTTCCACAGGTGTTCTTTTAAATCTTGTAAATACTGATGATTTCACAATAAATGTCTTGATGAAACAAGTTAACCGAT

Function

GO: NA

KEGG:

id description
K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10148 lncRNA upstream 3633 10081168 ~ 10083667 (+) True G8295
TU10094 lncRNA upstream 34224 10051041 ~ 10053076 (+) True G8253
TU10108 lncRNA upstream 75233 10011850 ~ 10012067 (+) True G8266
TU10107 lncRNA upstream 76070 10011016 ~ 10011230 (+) True G8265
TU10106 lncRNA upstream 77950 10009020 ~ 10009350 (+) True G8264
TU10165 lncRNA downstream 22253 10119010 ~ 10134267 (+) True G8304
TU10493 lncRNA downstream 40577 10137334 ~ 10137566 (+) True G8600
TU10555 lncRNA downstream 123587 10220344 ~ 10222076 (+) True G8651
TU10556 lncRNA downstream 125500 10222257 ~ 10224611 (+) True G8652
TU10603 lncRNA downstream 203125 10299882 ~ 10301188 (+) False G8695
XM_036938569.1 mRNA upstream 38623 10012701 ~ 10048677 (+) False LOC110533060
XM_036938421.1 mRNA upstream 38623 10012706 ~ 10048677 (+) False LOC110533060
XM_036938604.1 mRNA upstream 38623 10027067 ~ 10048677 (+) False LOC110533060
XM_036938466.1 mRNA upstream 38623 10027069 ~ 10048677 (+) False LOC110533060
XM_036938528.1 mRNA upstream 38623 10027420 ~ 10048677 (+) False LOC110533060
XM_036939042.1 mRNA downstream 186 10096943 ~ 10101637 (+) False asb3
XM_021617595.2 mRNA downstream 187 10096944 ~ 10101637 (+) False asb3
XM_021617682.2 mRNA downstream 187 10096944 ~ 10101637 (+) True asb3
XM_036939156.1 mRNA downstream 7412 10104169 ~ 10107871 (+) False lim2.2
XM_021587979.2 mRNA downstream 7450 10104207 ~ 10107888 (+) True lim2.2
TU9934 other upstream 95758 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 102836 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 627347 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 1831422 8255142 ~ 8255878 (+) True LOC110505168
TU8580 other upstream 1857065 8229297 ~ 8230235 (+) True LOC110501328
TU10501 other downstream 44487 10141244 ~ 10161286 (+) True gipc3
TU11995 other downstream 1379907 11476664 ~ 11514382 (+) True LOC110523899
TU14216 other downstream 3141856 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 3532106 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 3533279 13630036 ~ 13631890 (+) False G12410

Expression Profile