RNA id: XM_036941002.1


Basic Information

Item Value
RNA id XM_036941002.1
length 4937
RNA type mRNA
GC content 0.50
exon number 28
gene id LOC110523899
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11433102 ~ 11514427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAGGAACTTGAAGCACCATAGGCAGTTGTGTCAGTGCTGATTTGGAGGTTGGACTCGTTTCCAGCAAGCAGACATGTCATTCCGATGTCATGCTGTGTCCTTTTTAGTTAGCAAGTTATTAACCAATGTGTACCCTCTGTAAAAATGATTTGAATTGTACGTGAGCGCGAATTtataacacattttcatttacCCGTTGTTGGTAATAGCATTATGTTACGAGTTGGAAGCGCAGTGGCCTGcatgGCCTGCAGAAACCTGGTCTCCCCAAACATGGGGGTGAGGTTCAGGATGCCCTTACAGAAGCTGCACCCTCTGTCTCGTGCCATCCACCACCGGTACAACGCCAGTGTCACCACCCCGCACCGCTCGGCAGCCCGCCACTTCACCTCCATGTCCCGGCTGCCCATGCAGCCCCCCAAGCCTCCCCCGGGCGGTCACGGCGGCTGGCGCTACCAGCAACACCGCAACTTTTGGATGCTCCGCCTGGCCTCCAGGCTGCTCAAGCTCCGGTACATTGTGCTGGGCTCAGCAGTGGGAGGCGGGTATACCGCTAAGAAGACCTATGAGGAATGGAAGGATATGCTGCCTGATATGGATGAATACAACTGGGTAATACCCGATTTCTTCTGGGAGATGAGTAAACAAATTGACCTAGATAAACTAACCAAAATGCTGCCTGAGTTAGTGGAGATTGCCAAGTTTCTACCAGAGTTACCCGATTTAGATAAGATAGGAGAGAACGTCACCTTTCTCAAGAGCATCCTCTTCACCGCCGAAGCCCCTGGGGACACTCCAGTGAAATCTGCCACAGATGCCCCAGTCACGGCCACACCAGAGGCCAGCGGCAAGCAGTTTAGGAAGTCTTCAGACAAGGAGAAGGTGGACCAGCTTCAAGAGGAACTGCTCCGAACTCAGGTGAAGTACCAGCGCAtgctggagagactggagagggagAACAAGGACCTGAGGAAAGTGGTGCTGCAGAAAGATGAGAAGGGTATCCACCAGAGGAAAGTCAAGAAGTCTCTAATTGACATGTACTCTGAGGTCCTGGACATCCTCTCAGACTTTGACTCTAACTACAACACCCAGGACCATCTACCCAGGgtggtggtggtgggagacCAGAGTGCAGGGAAGACCAGTGTGTTGGAGATGATCGCCCAGGCTAGGATCTTCCCCCGGGGCTCTGGAGAAATGATGACCCGCTCTCCTGTCAAGGTGACGCTGAGCGAGGGACCTCACCACGTGGCCATGTTCAAGGACAGCAGTCGAGAGTTTGACCTGGGAAAAGAGGAGGACCTGGCTGCCCTGAGACATGAGATTGAGCTGAGGATGAGGAAGAGTGTCAAGGAGGGACAGACAGTCAGCCCTGAGACGATCTCTCTGAGTGTCAAAGGACCAGGCATCCAGAGGATGGTGCTAGTAGACCTACCAGGAGTCATCAGTACTGTGACTGCAGGCATGGCAGCAGACACCAAGGAGACCATCTTCAGCATCAGTAAGAACTACATGCAGAACCCCAACGCCATCATCCTCTGTAtccaggATGGGTCAGTGGATGCAGAGCGCAGCATCGTCACAGACCTGGTCAGTCAGATGGACCCGCAGGGGAAGAGGACCATCTTTGTCCTGACCAAAGTCGACCTAGCAGAGAAGAACCTGGCCAGCCCTAACCGGATCCAACAGATTGTTGAAGGAAAGTTGTTCCCTATGAAAGCCTTGGGTTACTTTGCTGTGGTGACCGGGAAAGGAAGTGCCGGGGAAAGCATTGACTCCATCAAAGACTACGAAGAGGACTTCTTCCAGAACTCCAGACTACTCAGAGACGGCATGCTGAAGGCCCACCAGGTGACTACTAAGAACCTAAGTCTGGCCGTTTCTGACTGCTTCTGGAAGATGGTCAGGGAGTCAGTGGAGCAGCAGGCCGACGCCTTCAAAGCGTCCCGCTTCAACCTGGAGACAGAGTGGAAGAACAACTACCCCCgtctgagagagctggacaggAATGAACTCTTCGAAAAAGCCAAGAACGAAATCTTGGACGAAGTCATTAGCTTGAGTCAAGTGACACCGAAACACTGGGAGGCCATCCTAGAGAAGAAGCTGTGGGAGCGTGTGTCCATCCACGTCATCGAGAACATCTACCTGCCTGCAGCCCAGACCATGAACTCTGGCACCTTCAACACCACCGTGGACATCAAGCTCAAACAGTGGACGGACAAGCAGCTGCCTCACAAAGCATTAGAGGTTGCCTGGGAGACGCTGCAGGAGGAGTTTGCCCGCTTCATGGCGGAGTACAAAGGGAAGGACCAGGACGACATTTTTGACAAGCTGAAGGAGGCGGTGAAGGACGAGAGTATCAAGAGGCACAAGTGGAACGAGACAGCCATGGACAGCCTGaGGGTGATCCAGCACAATACTCTGGAGGACCGCTCCATCACAGACAAGCCCCAGTGGGACGCAGCCATCCAGTTCATGGAGGAGACCCTGCAGGCACGCCTCAAAGACActgaCTCAGTGATAAATGACATGGCAGGTCCTTACTGGAAACAACGCTGGATGAGCTGGACGAGCCGCTCGCCCGAACAGCACATCTGCAACGAAACCAAAAAGGAGCTGGAGCGCCTGCTAAAACTCCATGAGGACCACACAGCATACCTGGCCAACGACGAGGTCACAACCGTCCGCAAGAACCTGGAGGGTcgaggggtggaggtggaccCTGTCCTGATCAAGGACACGTGGCACCAGCTGTACCGACGTCACTTCCTGCAGAAGGCGCTGCATCACTGTAACCTGTGTAGACGAGGCTTCTACTACTACCAGAGACAATTTGTTGACTCGGAGCTGGAGTGCAATGATGTAGTCCTGTTCTGGAGGATTCAGAGGATGCTGCTCATCACAGCCAACACACTCAGACAGCAGCTCATCAACACAGAGGTCCGGCGCCTGGAAAAGAACGTGAAGGAGGTGCTGGAGGACTTTGGTGAGGACAACGAGAGGAAGGTCCACCTCATCACCGGACGCAGAGTACAGCTGGCAGAAGACCTTAAGAAGGTCCGTGAGATTCAGGAGAAACTTGAAGCCTTCATAGAAGCTCTTCACGAGGAGAAGTAGAGCACCAGAAACCAATGGATCACAGAAGCATTGCACTGATCAAAGAAGACTAAATCCTCCCTCTGTAAatgactgaccccccccccccagtgacgCCCAACTGTTGCTCCTAGTTTTTTTTTCTGCGAGTGGAGTTTATCGGATGGAGCCCTTAACACTGAGGAGGATCAGGTTATCAGTGTTGCTGAGCAGATAGCACTTCCTCTGCTCAGAGTGGGCACCATGCTTTATAGGCCCATGATGAGTACACCAGACATGTCCTCTTCACACAGGAATCCAACAACTGTCTCCGGGCTTTTTTTGCTCTGCATTTTTGGCAGAGAAGacgaagagagaagggggaggacaAGATTGAAGTTACACACCTCGTGACTGACTGACGGATCGACCTCATgtcgtcttcctctctctctcattgctcCCTCGTTTCTAATAAATGAGGCGGTTGTGAAGGTTTTCTCTCTCACTGCCAACTTCCTTTCCTTTGTTTGGGAATGTCTTTAATCGGCTTGTGCACCTGTCAGAagttgtgtcccaaattgcactggtcaaaagtagtgcactgtggagggagtaggatgccatttgggacgcatgccCCAGAATGTCTGCTGGTGACCAGGTGAGTCAGACGTGGTGTGTGATGGAAGGGTGATGGGAACCACCCTCCTCTCTGTAGATTGACTAGCTGTAAATTAACGCAAGGGGTTGAATTAACGCCTGTTGGGTTGAAGTCATTCTCCTGCCTATTGTTAGCACTCGTTCCACATAGGACTTAATGTGAATTCACTTCAGTTATCCCAGCAGCTAGCTTTAAGCCAGTGCGTCACTAACCGTACAGGTACAGGCCTCAGTTATTAACCCTCACTTGCACAACAGTCAACCTCCATCCTCCTAAAACTAGAATATTCCACACTAgttgtaacaaagataatataataTAGATTGGATTTCTTATTTCAGGCAAACAGAGTTAATTTGAGAGTTATGTTTGCTATTGATAGGCAGCGCGCAATGCCCCACTATGTAccactctctctaccctactgtgTGTGCACCTCATCACAAGGGTTTATATTATGGCATTTCATTTCACTGTTGGACGAAACGGCCTCTACTATCTTTGTTCTGGGTGAAGATCCAGTGTTGGACTAGAATCTAGTTCAACCTGCAGTGGATGGAACCACATTGTCCAATCATGTTGGAGGAAAGATGCTCGTTGTATTCAAACGTGGTGACAGAGCTGCACAGGCATCTTTGGGTTCTTGGTACATTCATTCCTTTCACTTTTTCTGCTTCTTCATGCTCCTCTGCCTCTGGGCAGGTCACACTGTCTGACTAGctggtctctactggtctctcCTGAGggacctttttctctctctgctctactccATCCATCTgatcctctctcttgctcttctctCAAGCCCTCTATCTTCTATACTCTCCATCTCCTATTTCACCCCCCCCACTCTTTGTTCCCGGCTCTAAAGAGTGGAATGAAATGGTGACTGGTATACTTAACCCTGGTCCTTCATATGTGTATATGGGTTAATACCGTACGTGGTGTACATGTAAAGTTAATACCGATCATGAATCCGTTATTGCTTATGGGATGAATGTCAGAGTGTGATGCTCTTGTAACAAGATATCCATCGGTTGGTTCAACACCTACAGTTCTCTTTGATGTTATAGAATGTAATGTTTGCATGGTATACCCCATCAGATGTGCTTTATTTATTACAAATTTGATTGTTTAAGAAagtgaaaataaaattgatgttaataaaaatgtaattttccAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11960 lncRNA upstream 56311 11375423 ~ 11376798 (+) True G9980
TU11947 lncRNA upstream 72271 11359287 ~ 11360838 (+) False G9970
TU11948 lncRNA upstream 73006 11359287 ~ 11360103 (+) True G9970
TU11946 lncRNA upstream 73328 11359287 ~ 11359781 (+) False G9970
TU11931 lncRNA upstream 89086 11343014 ~ 11344023 (+) True G9955
TU12210 lncRNA downstream 758 11515185 ~ 11515414 (+) True G10208
TU12226 lncRNA downstream 19874 11534301 ~ 11534536 (+) True G10223
TU12229 lncRNA downstream 22965 11537392 ~ 11537763 (+) True G10226
TU12239 lncRNA downstream 27312 11541739 ~ 11542096 (+) True G10236
TU12244 lncRNA downstream 30276 11544703 ~ 11544905 (+) True G10241
XM_021618308.2 mRNA upstream 1270161 10140230 ~ 10162948 (+) False gipc3
XM_021587979.2 mRNA upstream 1325221 10104207 ~ 10107888 (+) True lim2.2
XM_036939156.1 mRNA upstream 1325238 10104169 ~ 10107871 (+) False lim2.2
XM_021617595.2 mRNA upstream 1331472 10096944 ~ 10101637 (+) False asb3
XM_021618773.1 mRNA downstream 150181 11664608 ~ 11666692 (+) True LOC110534079
XM_036941304.1 mRNA downstream 331292 11845719 ~ 11872791 (+) False ccdc50
XM_036941268.1 mRNA downstream 331292 11845719 ~ 11872796 (+) False ccdc50
XM_036941195.1 mRNA downstream 331294 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA downstream 331295 11845722 ~ 11879266 (+) False ccdc50
TU10501 other upstream 1271823 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1441567 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1448645 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 1973156 9458948 ~ 9459953 (+) True LOC118966784
TU8596 other upstream 3177231 8255142 ~ 8255878 (+) True LOC110505168
TU14216 other downstream 1724186 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 2114436 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 2115609 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2678029 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 3164923 14679350 ~ 14679578 (+) True G13380

Expression Profile