RNA id: XM_036941268.1


Basic Information

Item Value
RNA id XM_036941268.1
length 2247
RNA type mRNA
GC content 0.55
exon number 9
gene id ccdc50
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11845719 ~ 11879266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCATCCCGTAGCTGGTCTTGAAGCAAACCAGCAGGCTAGCTAATGAAATCCACAGCTGCAAaggagaaggaagaagaagagggagggtctgtgagagagagacccACACGAATCGGACTGGCAAAGGGAGGTTTAGAGGTGGTTAGGTAGCTACTTGATACTAATCAAAGGGACACCCGTACTAGTATTGGAATCATCAATTGGGTTTAtgacaaaaaacaataaatcagATTCCGGTACTGTACCCTTCGGGAAATCGTGGAAGCGTAATTCAACGTGAACGGCGTTGACACCTCGCTGACATCATGGCTGAATTTAGCATCGATCAGAACAAACTGCCTGGAGTAAAAGAAGTTGTTCGGGATTTTGCTGTTCTGGAGGACCACTGCCTGGCCCATAACCTCCAGGAACAGGAAATCGAGAGCCACTTGGCTTCCAACGTCCACAAGAGCCGTCTGGTGCAGCAGGACGTAGCGTTGGCCAAGCAGCTGCAGGAAGAGGAGGACCGGAGGGCCAAGGCCAAGGCCcacagacagcacagagacaTtGAGCGCAGTGACAATGAGATCGCCCAGGAGATTCAGGAGGAACTGGTCCGACAGGCCAAGCAGCAGCGGATACAGGAGGAGAAGGATGCGGCCATCGCTCGTAAActgcaggagaaagagaggaaggaggagaggaagcgaCAGAAGCAGCTGGAGGCCAACTTTGAGGAGGAGTACTACGAGGATAATGccatcctccctcccctcaacccAGCCAGCCGAGCTTCTCTGGACCTGGATGACAAACCCAGGTGGCCTggttctaactctctctcttcgGAGAGAGATGCTGTGGAGACTAGAACCAACTCTCTTTCCAAATACCCTGAGCACCATTTAGAGggtagggaggggagaaggggcaGGCATGGAGATGCACACCCTGAGCACCACCGCTCCAGTAGCAGGGGCAAACATGGAGACAGGTACCCCGACTACCACCACCCCACTGAGGGTAGAAGCAGAGGGAAGGGGGAACAGAGGAGCAGAGACCACCAGGGGTCCCAGTCAACCTTCTTTGCAGACAACCATGAGCCCAGGAGACagcgagaggaggagggggatagggTGGTCAGGAAGAAGGAGAGGCCCGCCCGGCCGCCCCCACCATCCCATATCCCTGTGAAGAGAGATGAGGCTTCGGATAGAGTGAGACAccgggagtgggagagagacggggaacgagacagacagagagaacccaGGAGAGGTGAGGAAATTGAGAGAGACGCACCAAGACAGGAAAGACACGGGGAGCGACTGAGAGACCAAGAGCATAGccgagacaaagacagacaccgagagagaACCAGGAGCAGGGAGCGAGGTCTGGATGAAGTTCAGGACGAGCCCATCCCCAGTAGCCGCAGCAGGGCCTGGGACAGTGGTGGGGAGGATGCCCCTAGCCCTGGGGATGATGAAGAGGGGAAAGGGGGGGCCAGGGCCCGCCTGACGCTCCTCTCTGGCCCCAGTGAGCTGTGTGAGGAGGCGGCAAGGAGGAGCCCCAGGATGGGGATAGAGCGAGGGGAGAGGGGACACAGGGACCCTGGGGAGGGCCTCATCACGGGCAAGGAATGCTCCCATACTCACCCCGCTCCCAGGGAGCCAGGTCGTATCGTGCAAGGAGGACCAGGGGGTTGTGGAGCAGGGAATTACGGGCTGGGCGAGGCCACCCAGGGCATCACTAAGCTGGACCTGCGGGAGCAGGAGCTGCTGGACATGGAGGTGGCCCGGAAACTACAGGAGGAAGAGGTGAAGGTGAGAGAACTGGCAAGCAAGATGGACAAGCGTGTGGCCCAAGTGGCTCAGGATGAGTCTCAACTTTTGACACATCCACGAAGCAAGGTACTGAGTGTAAAAGTTGTTTACCTTTGTTAAATAAATGATGTCCCTTGGTCCATTCATTCCTTTTGGTCAGTGTTAACCTGGGTAATCAAATCTCACCACATCATGGTTATATCCGTGTGTGGCGGGAGCCACATGAAGCAACACTATGTGCCTGAAAGGGACAATCTCAGATTGGAGGAACAACATACCGTTACCCCGCCTCTTGTTTTAGTAAACAGCTGGAGAAATGgagccactctcaaattcattggGAAAAAGTGTCTGTGTTTGTACTGTAACTGTATAGTGGTATTGGTGTTGTCAGGAGACGGCCACGTTGTATTGGTGTTGCCAGGAGACGGCCACGTTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12441 lncRNA upstream 46483 11798256 ~ 11799236 (+) True G10428
TU12445 lncRNA upstream 47757 11797021 ~ 11797962 (+) True G10431
TU12469 lncRNA upstream 55259 11790166 ~ 11790460 (+) True G10455
TU12466 lncRNA upstream 56971 11788440 ~ 11788748 (+) True G10452
TU12460 lncRNA upstream 68159 11777210 ~ 11777560 (+) True G10446
TU12483 lncRNA downstream 3025 11875821 ~ 11877997 (+) False ccdc50
TU12480 lncRNA downstream 5333 11878129 ~ 11879264 (+) False ccdc50
TU12481 lncRNA downstream 5428 11878224 ~ 11879264 (+) True ccdc50
TU12523 lncRNA downstream 10481 11883277 ~ 11884400 (+) True G10506
TU12530 lncRNA downstream 16413 11889209 ~ 11889516 (+) True G10510
XM_021618773.1 mRNA upstream 179027 11664608 ~ 11666692 (+) True LOC110534079
XM_036940953.1 mRNA upstream 331292 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 331292 11433109 ~ 11514427 (+) False LOC110523899
XM_036940803.1 mRNA upstream 353230 11433103 ~ 11492489 (+) False LOC110523899
XM_021619544.2 mRNA downstream 30895 11903691 ~ 11906713 (+) True LOC110534540
XM_021619656.2 mRNA downstream 49780 11922576 ~ 12025076 (+) True LOC110534688
XM_021619755.2 mRNA downstream 164929 12037725 ~ 12043817 (+) True cpox
XM_021619978.2 mRNA downstream 184012 12056808 ~ 12072687 (+) True LOC110535080
XM_021620082.2 mRNA downstream 242290 12115086 ~ 12146128 (+) False LOC110535183
TU11995 other upstream 331337 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1684433 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1854177 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1861255 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2385766 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1365817 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1756067 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1757240 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2319660 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2806554 14679350 ~ 14679578 (+) True G13380

Expression Profile