RNA id: XM_036941195.1


Basic Information

Item Value
RNA id XM_036941195.1
length 6406
RNA type mRNA
GC content 0.50
exon number 12
gene id ccdc50
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11845719 ~ 11879266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCGTAGCTGGTCTTGAAGCAAACCAGCAGGCTAGCTAATGAAATCCACAGCTGCAAaggagaaggaagaagaagagggagggtctgtgagagagagacccACACGAATCGGACTGGCAAAGGGAGGTTTAGAGGTGGTTAGGTAGCTACTTGATACTAATCAAAGGGACACCCGTACTAGTATTGGAATCATCAATTGGGTTTAtgacaaaaaacaataaatcagATTCCGGTACTGTACCCTTCGGGAAATCGTGGAAGCGTAATTCAACGTGAACGGCGTTGACACCTCGCTGACATCATGGCTGAATTTAGCATCGATCAGAACAAACTGCCTGGAGTAAAAGAAGTTGTTCGGGATTTTGCTGTTCTGGAGGACCACTGCCTGGCCCATAACCTCCAGGAACAGGAAATCGAGAGCCACTTGGCTTCCAACGTCCACAAGAGCCGTCTGGTGCAGCAGGACGTAGCGTTGGCCAAGCAGCTGCAGGAAGAGGAGGACCGGAGGGCCAAGGCCAAGGCCcacagacagcacagagacaTtGAGCGCAGTGACAATGAGATCGCCCAGGAGATTCAGGAGGAACTGGTCCGACAGGCCAAGCAGCAGCGGATACAGGAGGAGAAGGATGCGGCCATCGCTCGTAAActgcaggagaaagagaggaaggaggagaggaagcgaCAGAAGCAGCTGGAGGCCAACTTTGAGGAGGAGTACTACGAGGATAATGccatcctccctcccctcaacccAGCCAGCCGAGCTTCTCTGGACCTGGATGACAAACCCAGGTGGCCTggttctaactctctctcttcgGAGAGAGATGCTGTGGAGACTAGAACCAACTCTCTTTCCAAATACCCTGAGCACCATTTAGAGggtagggaggggagaaggggcaGGCATGGAGATGCACACCCTGAGCACCACCGCTCCAGTAGCAGGGGCAAACATGGAGACAGGTACCCCGACTACCACCACCCCACTGAGGGTAGAAGCAGAGGGAAGGGGGAACAGAGGAGCAGAGACCACCAGGGGTCCCAGTCAACCTTCTTTGCAGACAACCATGAGCCCAGGAGACagcgagaggaggagggggatagggTGGTCAGGAAGAAGGAGAGGCCCGCCCGGCCGCCCCCACCATCCCATATCCCTGTGAAGAGAGATGAGGCTTCGGATAGAGTGAGACAccgggagtgggagagagacggggaacgagacagacagagagaacccaGGAGAGGTGAGGAAATTGAGAGAGACGCACCAAGACAGGAAAGACACGGGGAGCGACTGAGAGACCAAGAGCATAGccgagacaaagacagacaccgagagagaACCAGGAGCAGGGAGCGAGGTCTGGATGAAGTTCAGGACGAGCCCATCCCCAGTAGCCGCAGCAGGGCCTGGGACAGTGGTGGGGAGGATGCCCCTAGCCCTGGGGATGATGAAGAGGGGAAAGGGGGGGCCAGGGCCCGCCTGACGCTCCTCTCTGGCCCCAGTGAGCTGTGTGAGGAGGCGGCAAGGAGGAGCCCCAGGATGGGGATAGAGCGAGGGGAGAGGGGACACAGGGACCCTGGGGAGGGCCTCATCACGGGCAAGGAATGCTCCCATACTCACCCCGCTCCCAGGGAGCCAGGTCGTATCGTGCAAGGAGGACCAGGGGGTTGTGGAGCAGGGAATTACGGGCTGGGCGAGGCCACCCAGGGCATCACTAAGCTGGACCTGCGGGAGCAGGAGCTGCTGGACATGGAGGTGGCCCGGAAACTACAGGAGGAAGAGGTGAAGGTGAGAGAACTGGCAAGCAAGATGGACAAGCGTGTGGCCCAAGTGGCTCAGGATGAGGAGATAGCCCGGCTGCTTATGGAGCGGGAGAAGATGGAGTACAAGAAgtccagagagaaggagaagcaggggATGAGGCCCGAAGAGAGGAGGAGGCCAGAGGGAGGAGACTACAagccAAGCTCAGAGGAGGTAGTGCATCCCAGACTACGAGAGGAGGAATACCAGAAGCCCAGGAACCACCAAAAGCCTGCCAGGCCTTCTCAACCTCCTCCCCATGACTATGAGAATGTGGAGTCCAGCTACTCAGGGAGCCACTATTCTTCCGGGTCTCCAGCGCGACCTGAGGCGTCTTACAAAGGTGTCTATTACAGACAGTGACCGAGGCTTCCTAAACCATCCATCTGActttttattgtttgtttttttcattgCTGTATTTTTAAAACTCCCATCACTTTCTATTGGCCAAGAGCCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTGCCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGTCTTTAAACTATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGATGGTCAAGAGTCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGATGGTCAAGAGCCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTGCCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGTCTTTAAACTATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGATGGTCAAGAGTCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTGCCTAGTCGTTGGCAGTGGGTTGAGGGAGGGTGTTGGTCAAGAGCCTTGGAACAATGTACCTAGTCGTTGGCAGTGGGTTTGGGGAGGGTGTTGGTCAAGAGGGGCAGCTGAGAGCTGAAACTCGCACCATGTCATTTGTTTTCTATTTTAATTGGCGTGACAACAAAGACAACCGAAAGGAGACGCCTAGTGACATTCTATCTCCTGCTGGCTCTTAACGGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTATGTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCCATCTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTATCTCCTGCTGGCTCTTAACTATGGATGATGATGTGGAAGatgaagatttaaaaaaatagtGAAGTGTTCCTGTTTTGCTGTATTAGTCGTTTGCTGGTGTTTCTGTCCCTCCGTGGATCATGCTCGTCATGGTTGATCAGGCCTTTGCTGGATATATAACTGTGcaatctctctctgtatctatggCTGTCTATGGGATGTGCCTGTCTTTGGAGCCAAAATGGTGGCCGCGTGGTTCTGTGCACTCCCAGGTTCCAGTTCTCCTGTCCTTGTATCGTGCTGCACATCAGGGCTGAACAACAACATGACCGACCCAGTCCAAAACTCTATTATATCAGGAGAATGAATATTTGTATTAACATCTTCCAGTCCGGAAGCGAATGGTGATCGTATGTGGACTTGTTGCTCTCTGCAAGCGCTCTACCTGTGTTCCCATGTCTTTCTAAGGGGCTGGTGTATATAGCTGCTGAGAATACGGACTTGGAGGTGAAGTGTTATAGGACACACTGCTATCATTGTGTTTTTACGTGCATACTTACTGAATGTGTTCTGTTCTCTTTGTGAAACTCTGACACACTCTTCGTTAGTCAACTAGAACACAAGCCACCGCAAACCCCAATGAGTTGTTTTGTGGATTAACAAAACTGCTATTTTAAATATTAGCCCTAATATATTTGATTGGATGTGCCATCAGTATTTGATTTTGTCTTATCTGCTTACAAACTGGCATTGGCAAATGCTTTCAGCGCTAATCGAAGTGGACCAGTAGGAATTGAATGCATGTACATTTCAGATCTGTGCCAAACATAACATTGTGCTTGTTTTGTCAGAGCTGTATTCACTAGGAACGGGACAAAACGGGGAGggacctgaatttgtccaatagaaacttgttttttttgcaaaacaTTTTCCATTGCGGTATGTTTTGCTACAGTGTACAAAAATGAATACTCCCCAGGATGTGTTTTTCCTAACCGACAGTGTCCATTGATTGAATGGTTGACTCGTTGGTCGCCTGTTAAAGTGCAAGTCACGTCTGAATTACTGTTTCTGCATTTTATTTacttttatatcattttatttaATCTTATTTGGCATCACTCTTAAAGGGCATTTCTTGTTTCCTGTACATTCCATTCCTCATGAAATGCCTTCACTCgccctgtctcacacacacaccactctctaaGAGGGTTATCACTTCCTGTGCGTGTAACATGAGTAAACATTCCCAGGGTTAACAAAGTGGAGGGAAGTATCAGTCATCCACTGAATCAACAGAGCAAGTGAGAACATGATGTAATTCCACTCAATGGGACCTTTAGACTCAGACAGATGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCGCCAGCTGGGTGATGGGGGTCAACTTCTCCCGCCAGCTGGGTGATGGGGGTCAACTTCTCCCGCCAGCTGGGTGATGGGGGTCAACTTCTCCCGCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTTGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGTGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCACTCCAGCTGGGTGATGGGGGGTCGACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTGCTCCCTCCAGCTGGGTGATGGGGGTCAACTGCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTGCTCCATGGCCAGTTTTGTCTTTGTTGTTTTCCTTATTGAATGAGGGTGGTAATAGTGGCGATAGATTAAACACTTTTTGATTACCAGACTTCATACTTTAATAGGATCCACGCTATATCAAAGGGATTACAGGAGACTAGGGACTGTTAGAGAGAGAATACATCCCAaaattgcaccatattcccttatatatatatatagtgcactacttttgaccagggccaatcgTGCTTTGGTTAAaagtagggattagggtgccatttgggacggagacATACTGTACTGCCAATGGTCATGGTACCACCATGTTCATATAATGTATTATAGCCTAATTATTGTGTATTACATATAAAGAGTAATCCCACACAGTTTCCAGTTTGATCTAATGACATGTTATGATTCCGTCGTATTTACATTTTTCCATTGAGTGATGTTCATCCTGGTCTATGatggtgtttttgttgttgatatgctTTGTCCAAGTTGGTAGCGTCTGCCTCAAGACTTTTTCTTTTTTTGAGACTTCTGTGCGTATCAAAGACATTCTAGATGTGTGAAATGTTCTGACTTGTTGGATGGATGGGATTTGTGCCATagggatgttttttgttttttcagGGACTTTTAGATAACGGGGAATCTCAGCTCCTTCTAGGGTAATGACGGTGAGGAGTATTGGTGTAGAACCGCCCAGAACTGAGATCTGTCTTTTTGTGGGATAATAGCACCATCTTGTGGACATATTGAATATCAAATTAAAACATGTACATTATCTGATCACACAGTCAGTGCATATTGGTGATTGCTGTGTAATGATTGTCCTATATGCTTCGAGTGCAATCTGAACCGAAATCAAGTGTAATATTTTTGTTTTGCCATCCAGAGCCTGAATGCAATCTACAAATGAAATCACAAAAGTGACTGTTGACACTTACTGTGACTGTTTTGTATCATGAACTGAATAAACAGTTGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12441 lncRNA upstream 46485 11798256 ~ 11799236 (+) True G10428
TU12445 lncRNA upstream 47759 11797021 ~ 11797962 (+) True G10431
TU12469 lncRNA upstream 55261 11790166 ~ 11790460 (+) True G10455
TU12466 lncRNA upstream 56973 11788440 ~ 11788748 (+) True G10452
TU12460 lncRNA upstream 68161 11777210 ~ 11777560 (+) True G10446
TU12523 lncRNA downstream 4011 11883277 ~ 11884400 (+) True G10506
TU12530 lncRNA downstream 9943 11889209 ~ 11889516 (+) True G10510
TU12529 lncRNA downstream 10906 11890172 ~ 11890579 (+) True G10509
TU12532 lncRNA downstream 13149 11892415 ~ 11892777 (+) True G10512
TU12540 lncRNA downstream 20453 11899719 ~ 11900056 (+) True G10519
XM_021618773.1 mRNA upstream 179029 11664608 ~ 11666692 (+) True LOC110534079
XM_036940953.1 mRNA upstream 331294 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 331294 11433109 ~ 11514427 (+) False LOC110523899
XM_036940803.1 mRNA upstream 353232 11433103 ~ 11492489 (+) False LOC110523899
XM_021619544.2 mRNA downstream 24425 11903691 ~ 11906713 (+) True LOC110534540
XM_021619656.2 mRNA downstream 43310 11922576 ~ 12025076 (+) True LOC110534688
XM_021619755.2 mRNA downstream 158459 12037725 ~ 12043817 (+) True cpox
XM_021619978.2 mRNA downstream 177542 12056808 ~ 12072687 (+) True LOC110535080
XM_021620082.2 mRNA downstream 235820 12115086 ~ 12146128 (+) False LOC110535183
TU11995 other upstream 331339 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1684435 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1854179 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1861257 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2385768 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1359347 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1749597 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1750770 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2313190 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2800084 14679350 ~ 14679578 (+) True G13380

Expression Profile