RNA id: TU12483


Basic Information

Item Value
RNA id TU12483
length 1959
lncRNA type sense_over
GC content 0.38
exon number 2
gene id ccdc50
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11845719 ~ 11879266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTCAAGAGGGGCAGCTGAGAGCTGAAACTCGCACCATGTCATTTGTTTTCTATTTTAATTGGCGTGACAACAAAGACAACCGAAAGGAGACGCCTAGTGACATTCTATCTCCTGCTGGCTCTTAACGGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTATGTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTAACTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCCATCTCCTGCTGGCTCTTAACTGTGGATGATGGTGACATTCTATCTCCTGCTGGCTCTTAACTATGGATGATGATGTGGAAGatgaagatttaaaaaaatagtGAAGTGTTCCTGTTTTGCTGTATTAGTCGTTTGCTGGTGTTTCTGTCCCTCCGTGGATCATGCTCGTCATGGTTGATCAGGCCTTTGCTGGATATATAACTGTGcaatctctctctgtatctatggCTGTCTATGGGATGTGCCTGTCTTTGGAGCCAAAATGGTGGCCGCGTGGTTCTGTGCACTCCCAGGTTCCAGTTCTCCTGTCCTTGTATCGTGCTGCACATCAGGGCTGAACAACAACATGACCGACCCAGTCCAAAACTCTATTATATCAGGAGAATGAATATTTGTATTAACATCTTCCAGTCCGGAAGCGAATGGTGATCGTATGTGGACTTGTTGCTCTCTGCAAGCGCTCTACCTGTGTTCCCATGTCTTTCTAAGGGGCTGGTGTATATAGCTGCTGAGAATACGGACTTGGAGGTGAAGTGTTATAGGACACACTGCTATCATTGTGTTTTTACGTGCATACTTACTGAATGTGTTCTGTTCTCTTTGTGAAACTCTGACACACTCTTCGTTAGTCAACTAGAACACAAGCCACCGCAAACCCCAATGAGTTGTTTTGTGGATTAACAAAACTGCTATTTTAAATATTAGCCCTAATATATTTGATTGGATGTGCCATCAGTATTTGATTTTGTCTTATCTGCTTACAAACTGGCATTGGCAAATGCTTTCAGCGCTAATCGAAGTGGACCAGTAGGAATTGAATGCATGTACATTTCAGATCTGTGCCAAACATAACATTGTGCTTGTTTTGTCAGAGCTGTATTCACTAGGAACGGGACAAAACGGGGAGggacctgaatttgtccaatagaaacttgttttttttgcaaaacaTTTTCCATTGCGGTATGTTTTGCTACAGTGTACAAAAATGAATACTCCCCAGGATGTGTTTTTCCTAACCGACAGTGTCCATTGATTGAATGGTTGACTCGTTGGTCGCCTGTTAAAGTGCAAGTCACGTCTGAATTACTGTTTCTGCATTTTATTTacttttatatcattttatttaATCTTATTTGGCATCACTCTTAAAGGGCATTTCTTGTTTCCTGTACATTCCATTCCTCATGAAATGCCTTCACTCgccctgtctcacacacacaccactctctaaGAGGGTTATCACTTCCTGTGCGTGTAACATGAGTAAACATTCCCAGGGTTAACAAAGTGGAGGGAAGTATCAGTCATCCACTGAATCAACAGAGCAAGTGAGAACATGATGTAATTCCACTCAATGGGACCTTTAGACTCAGACAGATGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGTGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGGGTCAACTTCTCCCTCCAGCTGGGTGATGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12517 lncRNA upstream 21956 11853634 ~ 11853865 (+) True G10500
TU12441 lncRNA upstream 76585 11798256 ~ 11799236 (+) True G10428
TU12445 lncRNA upstream 77859 11797021 ~ 11797962 (+) True G10431
TU12469 lncRNA upstream 85361 11790166 ~ 11790460 (+) True G10455
TU12466 lncRNA upstream 87073 11788440 ~ 11788748 (+) True G10452
TU12480 lncRNA downstream 132 11878129 ~ 11879264 (+) False ccdc50
TU12481 lncRNA downstream 227 11878224 ~ 11879264 (+) True ccdc50
TU12523 lncRNA downstream 5280 11883277 ~ 11884400 (+) True G10506
TU12530 lncRNA downstream 11212 11889209 ~ 11889516 (+) True G10510
TU12529 lncRNA downstream 12175 11890172 ~ 11890579 (+) True G10509
XM_036941268.1 mRNA upstream 3025 11845719 ~ 11872796 (+) False ccdc50
XM_036941304.1 mRNA upstream 3030 11845719 ~ 11872791 (+) False ccdc50
XM_021618773.1 mRNA upstream 209129 11664608 ~ 11666692 (+) True LOC110534079
XM_036940953.1 mRNA upstream 361394 11433108 ~ 11514427 (+) False LOC110523899
XM_036941002.1 mRNA upstream 361394 11433109 ~ 11514427 (+) False LOC110523899
XM_021619544.2 mRNA downstream 25694 11903691 ~ 11906713 (+) True LOC110534540
XM_021619656.2 mRNA downstream 44579 11922576 ~ 12025076 (+) True LOC110534688
XM_021619755.2 mRNA downstream 159728 12037725 ~ 12043817 (+) True cpox
XM_021619978.2 mRNA downstream 178811 12056808 ~ 12072687 (+) True LOC110535080
XM_021620082.2 mRNA downstream 237089 12115086 ~ 12146128 (+) False LOC110535183
TU11995 other upstream 361439 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1714535 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1884279 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1891357 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2415868 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1360616 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1750866 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1752039 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2314459 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2801353 14679350 ~ 14679578 (+) True G13380

Expression Profile