RNA id: XM_021619544.2


Basic Information

Item Value
RNA id XM_021619544.2
length 1753
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110534540
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 11903691 ~ 11906713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGAGTGGATGCACTACTCACTGAACACAGGCGCAACGCTGAGAGTACGAGATAACGGTCCACAACGCGGCAGGAATTAGACTTTAACGGAGTTCGGTTTGCTTCAATAGATTTAACAGACATTGAGAATCAAGGACATTTCAACAATTTAAAGATTAGATTTTCCACTGTTCATGTATTTTGTCTTTTTTCATCAACTCCCATTTTAGTAGCCTTTATTATCAAACATCATCTCTACCATACCATATCATCGGAATACCATGACGAGCTCTGCGGTTCAACTTCCCGGTTATGCTCTTGCTTTGATCGGTCTTGTTGGCTCAGTGATTGCCACCACTATGGTGGAGTGGAAAAGGCACTCTTACACAGAGAGCACGGTAACATCAAAGGAAACGTACCTGGGCTTATGGATGTCATGCACCGTCGACGCCACAAGACACACGATGTGCGTCAATTACAAGTCACTCTTTCACCTGCCAGCGGAGATTCTGACCACCCGAGTGGTGATGATCCTCAGTGTCCTGTTGTCAGCCATTGGGGTGCTGGTAGCCACGCTGGGGATGAGATGCACTCGGTGCCTGGAGGAGGATGAAAAGCAGAAGGATAGAGTAGCCATTGTTGGAGGATTCCTCTTCATCATTGCAGGTGTTCTGGCCATATCGGTAACCTCCTGGTTTGCCAACGCCATCATCCGGTCCTTTGTATTCTCAGACTCACCTACTTCCTTACATAACAGGTTTGAGTTTGGCAACGCTGTGCTGGTGAGCTGGGGTGCAGGTATCTGCTCTGTGGTGGGCGGATTTCTCCTGGGCTGCAGGTATCTGTGGAGTTGTCCCCAGGGCTCACGCTCAGTCTCATCCTTCACCCAACCCAAAGTCATTCCTGGCACCAGGCCTGGCACCCACTATGTTTAATGGGCCACACTATGCCTAGAGGACGCCCTAAGAAGCTCAATTCGTTGAGGCTTAAACCAGAGAGCCTACTACTCACACTGAAGGACTACAGTAGAGCAGAATATGTGAAGTTACTCAAGTACTCTACTGTGTGTGACTCGCCTACATTATGATTGTGAGAGTTCATTTGGGAGGTCTGTGTGCTCCATGAAAGTATTTTTCTAATGAATTGTGTTTGGATGTGTGAAGACGGTTGGCTGTGGTCATGATGTGCAACACCTGCCATATCTCTGTTTTCAACCTCATGTCAAGTGCCTCCACTAAAGGAATGTTCAAATATCGCCAATGTAGCTACCATTTCATTATATACCATCACCAATGTACAGTGTTGCAGAGTAGTAATCCTATGACTCTCAAAATGTACAGatgggaataagcaggaaatctggaaTCCCCTAACAAGGGCTTCTGGGAAAGCTAGGAATTCTGGTAATGTTACTGGAACTGTGCAACTCTACTGCAGAGTAAGCTTCCATAAATATCAGCTTGATTGAACTGTGTCTGATTGTGTTCTGTTGTGGCCAACAGATTAGAATACACCTTCCATTTAaatgattttcacttttcaccAAGGGAATGTATGGTTCACCTATGGCACAGATTGCACATGACAAGAAACTTTATTTCTTCAAATTTCTTCAAATTTGTACATTTGAAACGTGCACTTTAGAGTCTACTGTACTGCAATATTCCCTTAATTTAGTACTTGATCATGTGCTATATATGGTAAACTTGTCATAAATCTGCTGTTATTATTATCAAGATGAATTTGCATAAAGATACTTCATTAGATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12544 lncRNA upstream 1727 11901734 ~ 11901964 (+) True G10521
TU12540 lncRNA upstream 3635 11899719 ~ 11900056 (+) True G10519
TU12532 lncRNA upstream 10914 11892415 ~ 11892777 (+) True G10512
TU12529 lncRNA upstream 13112 11890172 ~ 11890579 (+) True G10509
TU12530 lncRNA upstream 14175 11889209 ~ 11889516 (+) True G10510
TU12644 lncRNA downstream 129833 12036546 ~ 12098355 (+) True G10596
TU12647 lncRNA downstream 139429 12046142 ~ 12048908 (+) True G10598
TU12649 lncRNA downstream 171445 12078158 ~ 12081746 (+) True G10600
TU12667 lncRNA downstream 176870 12083583 ~ 12084503 (+) True G10618
TU12716 lncRNA downstream 259141 12165854 ~ 12166761 (+) True G10657
XM_036941195.1 mRNA upstream 24425 11845721 ~ 11879266 (+) False ccdc50
XM_036941231.1 mRNA upstream 24425 11845722 ~ 11879266 (+) False ccdc50
XM_036941343.1 mRNA upstream 24425 11845729 ~ 11879266 (+) False ccdc50
XM_036941268.1 mRNA upstream 30895 11845719 ~ 11872796 (+) False ccdc50
XM_036941304.1 mRNA upstream 30900 11845719 ~ 11872791 (+) False ccdc50
XM_021619656.2 mRNA downstream 15863 11922576 ~ 12025076 (+) True LOC110534688
XM_021619755.2 mRNA downstream 131012 12037725 ~ 12043817 (+) True cpox
XM_021619978.2 mRNA downstream 150095 12056808 ~ 12072687 (+) True LOC110535080
XM_021620082.2 mRNA downstream 208373 12115086 ~ 12146128 (+) False LOC110535183
XM_021620238.2 mRNA downstream 208373 12115086 ~ 12147336 (+) False LOC110535183
TU11995 other upstream 389309 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1742405 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 1912149 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 1919227 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2443738 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1331900 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1722150 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1723323 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2285743 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2772637 14679350 ~ 14679578 (+) True G13380

Expression Profile