RNA id: XM_021620082.2


Basic Information

Item Value
RNA id XM_021620082.2
length 2959
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110535183
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12115086 ~ 12147336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGTACTTTCATGAAAGCTGGTTGCGGATACGTAACCTCACCCATTAAACTTTTAGTCGTGAACGCGGCGCAGGCATCTCTGTGCTTTGACAAATTGGGTTTTCTATACTTGACATTACATTTGTTTTAATCCACTATCTGCACAGAAAAGTCCTAAAATAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGGCTCTGTTAATTTGTCAGCGTGGCGTGAACATGACTGAGGTAGCACAAAATATTGCTGATGTCGCACACGACATGACTGATGTGGCACATGATATGTGTGATGAAGCACACAAAATGAGTGATAAAGAGAACAACGACAACATGAACGAGTTGCATGGCCATGTGGCACACAAAGAGGATGATGTGGAACACGACAAGCATGATTTGGCACACAAAGACAATGAGGCATACAAAAATGACGATGTGTCCCATGACGAACATGATGAGGCACAAGAAAAGAATGAGGCGTACAGCGACAATGAGGAAGAAGTTCACACCGAAGAGGATGAGGTTCACACAGAGcccgaggaagaggaggaggaagaagatgagGCACACGACAGGAATGATGTGGAGCACAAAGAAAATTATACAGTTAAGGACAAGGCAAGGCAAAGTTCAAGATCCAGGAAGGACAAGAACAATGTGGCACAAAATGGAGTGGCGCATGACATGAACGATGAGTCAGAGAAAGAAGAGAATGACCAGTCACAGAACGTATCTGAGGTGGCTCTGAAACAAAAGAGACTTCTGCGCTCCAAAAAGCCGGTGGCCAGGAGCTACGTGCCCCAGATCGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCTAGAGGAGCACCAGAAAAGGAAGGAGCAGTACGTCAAGGAGAGAGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccGGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGCAGTGTGAAGGGGAAGTTTGCCGAGATGGAGAAGCAGagacaagaggaggagaggaagcggatggaggaggagaggaagaagcgcGCCGCCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACACCATCCTGGTCCGTGTGGTGCCGGCAAAGCTGTCACGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAAAAGAACCGCGAGGAAGAGcagaagaagaggacagaggaggagaagaagaagcgcTACAACGAGAACAGGCTCTCCTTCCGCGAGGCCAAGCGGAGCTCGGTCGTCCAGGATGAGGACGAGGAACAGCCCACAGAGAAGGAGCAGGTGACTCCTGGGAAGCTAAAAATGACGTTTGAGGAggctgagaaggagaggcaggaatGCCTGAGAaagcaggcagagagggaggctaAACGTCGTCTGCAGGACGAGAAGAAAGCCTTTGAGGAGGCCAAGCTGGAAATGggagaagatgaggaggactCACAAGGAGCTCAAGGCGAGAGAGACGTCATCCAGCCTGGTAAACTGAGGTTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAACGCAAAGCAGCAGAGGTTGAATACAAGAGAcgaatggaagaggagaggaaggctttCGCCGAGGCCAGGAAAAGCATGATAGTGGATGACGATGACGAGGTGTTGATGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGTGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTCGCAGAAGCCCGCAAGAATATGGTGCTAGATGAGGACGAGGACGGAATGGTCAAGAGCGACTCCCAGGAAGCATTGCACCCTGGAAAACTGGAGATGAACTTTGAAGAGCTGCTAAAGCAGAAGGAGGAAGCCGATAGGAGGTGCAAAGTGGCGGCGCGCAAGAAGAAAATGGAGCAGGAGAAACAGGAGTTTGAACAGCTCAGACAAGAGATGGGAGAGGATGTGGTGAATGAGAGCTCTGATACAGTAAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAAAAGATCAAGCAGTTGAAAGACGAGGAGgtccagaagaagattgaggaTGTGAGAGCAAAGAGAAAGGCTGTAGATGAGGAAATcaaagagagggaagaagagaggattcAGGAGGATGATGATGAAGGCAAAAAGGACACAGAGAAAGGGGCTGAGGAGGCTCCGTTCAGACAAAAGGTGGACATGCGCGCACGGTTTGAACAAATGGCCAgagccagagaggaggaggagaagaagagggtggACGAACAGAAGCTTCAGAGGATGCAGTTCGAACAGCAAGAGATTGACGCCGCTCTCCAAAAAAAAAGGgacgatgaggaggaggaagagggaagcaTCATCAATAGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACCGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGGAGATGCTCCAGGACTGTGAAGACTATCAgtacatagagagaggagagacattctGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGTACATGTGCAAGGCTGTCAACAGCAGAGGCACCGCCGCCAGCACCTGTATCCTAACGATAGAAAGTAAGCAATCTTCCATCTGACTGTCACTACATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12644 lncRNA upstream 16731 12036546 ~ 12098355 (+) True G10596
TU12667 lncRNA upstream 30583 12083583 ~ 12084503 (+) True G10618
TU12649 lncRNA upstream 33340 12078158 ~ 12081746 (+) True G10600
TU12647 lncRNA upstream 66178 12046142 ~ 12048908 (+) True G10598
TU12544 lncRNA upstream 213122 11901734 ~ 11901964 (+) True G10521
TU12716 lncRNA downstream 19726 12165854 ~ 12166761 (+) True G10657
TU12753 lncRNA downstream 65615 12211743 ~ 12213285 (+) True G10691
TU12755 lncRNA downstream 71228 12217356 ~ 12217585 (+) True G10692
TU13111 lncRNA downstream 166595 12312723 ~ 12318190 (+) True G11015
TU13192 lncRNA downstream 195879 12342007 ~ 12342286 (+) True G11089
XM_021619978.2 mRNA upstream 42399 12056808 ~ 12072687 (+) True LOC110535080
XM_021619755.2 mRNA upstream 71269 12037725 ~ 12043817 (+) True cpox
XM_021619656.2 mRNA upstream 90010 11922576 ~ 12025076 (+) True LOC110534688
XM_021619544.2 mRNA upstream 208373 11903691 ~ 11906713 (+) True LOC110534540
XM_036941231.1 mRNA upstream 235820 11845722 ~ 11879266 (+) False ccdc50
XM_036942469.1 mRNA downstream 8294 12154422 ~ 12165172 (+) False mindy4
XM_036942437.1 mRNA downstream 8296 12154424 ~ 12165172 (+) True mindy4
LOC110535487 mRNA downstream 104041 12250169 ~ 12253531 (+) True LOC110535487
XM_036989306.1 mRNA downstream 111840 12257968 ~ 12312639 (+) True LOC110525067
XM_021621168.2 mRNA downstream 315239 12461367 ~ 12473058 (+) False armh1
TU11995 other upstream 600704 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1953800 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2123544 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2130622 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2655133 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1092485 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1482735 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1483908 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2046328 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2533222 14679350 ~ 14679578 (+) True G13380

Expression Profile