RNA id: XM_036942437.1


Basic Information

Item Value
RNA id XM_036942437.1
length 3777
RNA type mRNA
GC content 0.46
exon number 18
gene id mindy4
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12154422 ~ 12165172 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCCTATCCGGAGGGGTTGAGAAGAGTGTAAGAAAGGAGTGAAGTTGAAGTAAGACACAAGATGGTTCCTTGTCAACAGAGGGATCCTGACATGTTGCAAGAAGGTGGACGTATTACTTTGGTTATCAACTGCACAGCGCAAACATCTTAGAAAATAGGCGGCATTGTGAGTGTGGCTGAGCGTTTTTTGGGATTCAGGGACTTCTGCAGAGGCATTACCTTACAAGGAATACTGTCGATGAATGAACCGCCTCCCgttacagtaggtggcggcaataCACCAATAGGTATAGTCTGCCATAAAAcattgaagaagaagaagaagagcggAAGCAAGGATGCATGACGCACGACGAAGCCTCTCTTGGCCCAGCAACACGCATGCACTGTAACCATAGAAACAGACCATACTGTTAATTATTATGGTTGTtctatactgtgctgtatgtaGCCTGCCGCTAGCTGGTTAGGTAGCTAACATTTTTTTGTGGGGGAATTTGTCGTTGATGCCACAAGTTATGGTTGTACGAGTAGAAGAAGTTGCTGCATCGCTTGTGCGGGAATTTCTCAGTCGGAAGGGACTCAAGAGAACGATTGCCTGCATGGATGAAGAGCATCCCCGTACAGATGCCAGCATCAACAATAGATCCGATCTGCGACAAATTCTTCATTTGGAAGGTCTATATAAAAAGAACAAGGCCCAAAACTGTCCCCTGAAATCAATGTTGGAAATCATTGTAAGACATCACATTgaaggacataaagaggacaggCCAGGCTTCAACAGTGACGTCATCCAGACCGTATCAACTACACAGAAGTTGGTGACAAAGTCTCCAATATTGACACCAACAGTGTATGACCAAAGCAGGGCAGAAGATAACACTACTGGATTTATTTTCAACAAAACTGACATGTCAAGGTCACTTTCAGAGGTTGTCTGTCCACCTCATGGTACATTGTCATCATTTGAAGTGTCAGATACTCCCCAGAGAAGTTTCTGGAGCCATAGCCTTTCCTCAGAGGGCCAGCAGGACCGACAGCCTGTACCCTTCTCCCTAGACAATGACAGCACCGCTAAAAGGGAGTCCTTTTCAGACAAAAACACAGTCGTCACCACAGAGAGTACTCATAAGAACAAAACAAGTCGCCTCAGACGAGGCATGATGGCAGGTCCCATAGCTAGTTCCCCCCAGGAATCGAATAGAAAACGTCAGACTCGACGGTTGGGAGGCCCTAATCTTCTCCTGGCAAATAATGAAAACCACAAAAACATCAGTGATGGGCCTCTGTTGACTACTGTCCAGTCACAGAGAATGGTTAAAGGGTTGACAGAGCTCTCCACTGCTGACCCTGTGAGAGAAAGCCAACAGACGCGGCGCAGCACACTGGGAAAAGGATTTGATGAAGATGGCTATGGGTTTGAGAGAGTAGGAAAAGACAAGCACAAGACCAGCAGaaCAAAGTCAATGACCAATCAAAATGTTGATCTGGACATGTCGGAGATGATTTTGGATGAcattgatgatgatgaggagttgCGTGAGCTCTCCAGAGTGTCCTGCCACTCCTCCAGTTTGCCTCCAACCACTTCTGATAGTCAACCCATGGACCAGCATACTGCCATTGCCCTGAAAGAGCTCATCCTTGGCTCCAGCACCAGTTGTTTCAGTGCCGAGTGGAGGAGTCAGAGTTTCACTTTCTCCGATGCACCTGATCTGAGATATGGGCTGGTTCAGAAGAAGGGTGGTCCTTGTGGAGTTCTGGCTTCAGTCCAGGCTTGTATTCTGCAGAAACTTCTATTTGAGGGGACCGGCAGCGACGCAGGGCACCAAAAATTAAGACCCTCTGGTGCTGTGAGAACAAAGTGCCTCACTTTAGCCACTGCTGAGATCCTGTGGAGGGCTGGGGAGGGGAAAAAAGCCACCATCGCCATAACATCAGGAAGAAATCATTTCACCCCTATAGGACACCATAGATCTGAAGGAGTACTAGAAAAGATGACATGTATTGATGTTGACAATCTAAAGGACCTTCAGTTGCTTGTGGAACAGCATATTCAACAGTTTGAGTCGGGAGCCTTAGGGTGTATATTGCTCACCATCTCTGCTATTCTCTCCAGATCTATTGACCGGGTTAGAGAGGATATGGATGTCCCCAACACCACACTCATCGGAGCCCATGGCTACTGCACACAGGAGCTTGTCAATTTATTGCTGTGTGGACAGGCTGTGTCCAATGTCTTCAACAACAATATGGAGCTGGATTCAGGCAATGGAAACCTGACCCTTCTCAAGGGAATAAGATGTCGCAGTGACATTGGACTGCTGTCCTTATTTGAACATTATAATATATGCAAGGTTGGCTCCAACCTGAAGACTCCCAAGTTCCCTATCTGGGTGGTGTGCAGCGAGAGCCATTTCAGCGTGCTCTTTGGTGTGCAGGAGCTGCTGAGTGACCAGTGTGTGATCGGGGAGTTTGACCTGTACTACTACGACGGCCTAGCCAACCAGCAGGAGGAAATCTGCCTAACTGTCTTTGTAGGTACCTCAGGAATATCTGCTGGCTGCCAAGGTGTGGACACCGATCTCATTCCTCCTCTTGAACACTGTATACGGACCAAATGGAAAGATGCCATTGTCAATTGGAATGACACCGAGCCCATACTTTGACTGGCTAGTGGATAGAAGGTGATGACTGTAGAAGAGACTGGGCCTACCCCATGGCTGAAGACACAAAATATACTGCTTTCTTATTGCAAAATATGCAATTTAGCAAACAcgtttatccaaagcgacttatagCAGCCATGCATGCATTACAGATTAAATAGATTTACTTACAATAGCTgtgcatgggtaaaatcactggggaagccaagccccccccccccccccccccccaaagccatattacaacttactgtgtgtgttgtgataactgcgttgtttgctctagaacctgttagttcatatgccttgccactgtgatatataggcctaaggacGAGACAGTAAGAAGAcatagtggcagaataaattcaaccacacctttgtttagtcacaaaaccggagagaaacctctgtctggtgaagtccacaaatcATATTGCATGTAGCAAACAGTTATATGACCTACAGCATaatcaagcaagttaatgtttctgacattttactaaacaactattgatttagaaccacagagagttaacataaggagctgcctccactattccaggcACCATTTctacttcaacatttcaacatcatcaactCAAATCCCCTATGCTtggtctaatacagtgacaactaaaagataccaaaaacgatttggtccaatcaacgtaagctaaatgtgatgtggctgtccatggttctgctttgtctctctgtgtgtgtgcgcattcgTGCAAGTAGAattaacatgttgactcaccctacttgtagagaaacgccaatgccatcatCTCCTTTCATGTCGATGAAatggtctatgactctgtcattcagtacacacttttagtttttgctgtcctaggctacctggctaaaatgcttgctagctagcttaaCTTACTTTCATGGGCAACAATgcgccaggccagctagttaacattagtctACTAcgtctagctacatattgaacttccatcatctcaggccaggggcacaatgtatgaattaatggttggatcattatcaccattataatcattggcccgTACGGAGAATTAAAGCTGCATTGTATAACTTTTTGGGCatcccaaccaaattca

Function

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12644 lncRNA upstream 56069 12036546 ~ 12098355 (+) True G10596
TU12667 lncRNA upstream 69921 12083583 ~ 12084503 (+) True G10618
TU12649 lncRNA upstream 72678 12078158 ~ 12081746 (+) True G10600
TU12647 lncRNA upstream 105516 12046142 ~ 12048908 (+) True G10598
TU12544 lncRNA upstream 252460 11901734 ~ 11901964 (+) True G10521
TU12716 lncRNA downstream 682 12165854 ~ 12166761 (+) True G10657
TU12753 lncRNA downstream 46571 12211743 ~ 12213285 (+) True G10691
TU12755 lncRNA downstream 52184 12217356 ~ 12217585 (+) True G10692
TU13111 lncRNA downstream 147551 12312723 ~ 12318190 (+) True G11015
TU13192 lncRNA downstream 176835 12342007 ~ 12342286 (+) True G11089
XM_021620238.2 mRNA upstream 7088 12115086 ~ 12147336 (+) False LOC110535183
XM_021620082.2 mRNA upstream 8296 12115086 ~ 12146128 (+) False LOC110535183
XM_021620159.2 mRNA upstream 8296 12118830 ~ 12146128 (+) True LOC110535183
XM_021619978.2 mRNA upstream 81737 12056808 ~ 12072687 (+) True LOC110535080
XM_021619755.2 mRNA upstream 110607 12037725 ~ 12043817 (+) True cpox
LOC110535487 mRNA downstream 84997 12250169 ~ 12253531 (+) True LOC110535487
XM_036989306.1 mRNA downstream 92796 12257968 ~ 12312639 (+) True LOC110525067
XM_021621168.2 mRNA downstream 296195 12461367 ~ 12473058 (+) False armh1
XM_021621329.2 mRNA downstream 296195 12461367 ~ 12473058 (+) False armh1
XM_036943199.1 mRNA downstream 319514 12484686 ~ 12496762 (+) False LOC110536107
TU11995 other upstream 640042 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 1993138 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2162882 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2169960 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 2694471 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 1073441 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 1463691 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 1464864 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 2027284 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 2514178 14679350 ~ 14679578 (+) True G13380

Expression Profile