RNA id: XM_021622505.2


Basic Information

Item Value
RNA id XM_021622505.2
length 3487
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC110536795
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 12702673 ~ 12765497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCTTTATCTGGTCCTGCTCTATTGTGACTGAGATAGGGATAGTGTTACTGCTTCACTCCTCTGCTCCACCAAACTATACAACGTACacagggagaaaaaaaaagaagaggtTCAATGGGAAATTATAAATCAAGACCAACTCAGACATGTACAGATGAGTGGAAGAAGAAGGTGAGTGAGTCATACTCTGTGATCATCGAGAGGCTGGAGGATGACCTACGCATCAAAGACAGCGAACTGACAGACCTCAAACAGGTCTTCAGCTCTGATGAAGCTTTCCAGAAAGTGAACTTGAATTACCGGACAGAGAGCGGACTGTCCCTGTTGCATCTCTGCTGCATGTGTGGCGGGAATAAAGTCCACATAAGGACTCTGATGCTGAAAGGCCTACGTCCATCCAGGCTTACCAGGAATGGGTTCACTGCTCTACACCTGGCTGTCTATAAGGACAATGCAGAGCTGGTGACGGCAATGCTCCACGGAGGGGCAGACATCCAGCAGGTTGGGTACGGTGCCCTCACAGCCCTGCATATCGCCACCATCGCTGGGCACCATGAGGCAGTGGATATCCTTCTCCAGCATGGAGCCTATGTCAACGTCCAGGATGCTGTCTTCTTTACTCCTCTGCATATTGCTGCTTACTATGGCCATGACCAGGTGGCTAAGCTGTTGTTGAAGTTTGGGGCGGATGTAAATGTGAGTGGGGAGGTGGGAGACAGACCGTTACACCTGGCAGCCGCCAAGGGCTTCCTCAGCGTCGTAAAACTGCTGCTGGCAGAGGGGAGCAAGACTGAAGTGAATGCTCAGGACAATGAGGACCACGTCCCACTCCACTTCTGTGCCCGTTTCGGCCACCATGAAGTGGTCCACTTCCTGTTGCAGGGCAACTTTGAGCTACAGCCTCACTCCGTCAACATCTACGGAGACACCCCTCTCCACCTGGCCTGCTACAATGGAAAGTTTGAGGTGGTGAAGGAGATAGTGCAGCTGTCAGGCACAGAGAGTCTGTCCAAGGAGAACATATTTAGCGAGACCGCCTTTCACAGTGCCTGCACCTATGGGAAGAGTCTGGAGATGGTCAAGTTCCTGCTCGGTCAGAACGCCATGAGCATCAACCATCAGGGCAGAGACGGACACACAGGTCTGCACAGTGCATGTTTCCACGGCCACATACGTCTGGTCCAGTTCCTATTGGACAGCGGGGCTGACATGAACCTGGTGGCTTGTGACCCCAGCCGGTCCAGTggggagaaggaggagcagaCCTGCCTCATGTGGGCCTATGAGAAAGGTCATGATACCATCGTCACTCTGCTCAAACACTACAAGCGTCCCCTGGATGACTCCCCATGTAACGAGTACTCTCAGCCTGGCGGAgATGGGTCCTACGTGTCTGTGCCGTCCCCCCTGGGCAAGATCAAAAGCATGACCAAAGAAAAGGCAGATGTTCTTCTCCTCCGGGCCAGCCTCCACTCAAGCTTCCAACTGCAGCTCTCTGACCTGGAGTTCAATGAGATCATTGGTTCAGGCTCATTTGGAAAGGTCTATAGAGGCAAGTGTAAGAACAAGGTCGTTGCCATCAAAAGGTATCGGGCCAACACGTACTGCTCCAAGTCAGACGTGGACATGTTCTGCAGGGAGGTGTCCATCCTGTGTCGTCTCAACCACCCCTGTGTCATCCAGTTTGTGGGGGCATGTCTGGATGACCCCAGCCAGTTCGCCATAGCCACCCAATATGTCTCCGGGGGCTCCCTGTTCTCCCTGCTGCACGAGCAGAAGAGGATCATCGATCTGCAGTCCAAGCTCATCATCGCCATCGACGTGGCCAAGGGCATGGAGTACCTGCACAACCTCACTCAGCCCATCATCCACAGGGACCTCAACAGTCACAACATTCTACTCTATGAGGACGGGCATGCTGTGGTGGCTGATTTTGGAGAATCCAGATTTCTGTTATCCGAGGTTGTGGACAATATGACCAAGCAGCCAGGGAACCTGCGCTGGATGGCCCCAGAGATATTCACCCAGTGTACACGCTATACTGTCAAGGCCGACATGTTCAGCTATGCCCTGTGTCTGTGGGAGCTGCTCACTGGAGAGATCCCGTTTGCCCACCTGAAACCTGCTGCAGCAGCTGCAGACATGGCCTACCACCACATCCGGCCTCCGATTGGCTACTCCATACCCAAACCCATCTCTGCCATGCTAATGAGGGGCTGGAATGTCTGTCCAGAGGATAGACCTGAGTTCTCTGAGGTGCTGGCCACACTAGAGGAATGCCTATGCAATGTGGAGTTGATGTCCCCAGCCTCCAGTAACAGCAGTGGGTCCCTGTCCCCCTCTGGCTCGTCTGACTGCCTAGCGAGGGGCAGTCCTGGTCGAAGTCACGTGGCCGCCCTCCGTTCCCGCTTTGAACTGGAGTACGCCCTCAACGCCCGTGCCTACGCAGTCTGGACTCAGAGCGAGGGACGACGTGATTCCCAAGGTCCGTCTCTGGATGAACTGAGGAGGAATATGCAGTTTCCACCTATTGATCGAAATGGGTATGTGTCAGACCCTATGAGCACCATGCGCTTCCACTCCAACTGCAGCAGCAACGGCAGCTTTGAAGACAACTAACATAGATGGGATGTCTTCCAGCTCTACTATGCACTATTACTGTAGTTCATAAAGCCATAACCTTATTTCTAAGTTTATCACATAGACATATTGGTTGATCTAGTCTTGAGTATAAGCTATATATATATCGTTATGTGTATTTCCTAAAGCTATTTACTACTTTCTGTGTTTATGGTGTTGAACTGTTTGAATAGATTGGTGTGGTTTTTATATCTGGTAAGTATTTTTTGGATACGAGGCATTTTGGGGGTTTGGAAAATGTTTCATAGTATACCACCTGTATAGTCTATTCTTAAAAACATCTTCAAGCGTCAGAATGCTTAGGAAATTTGtggtttttattttcaataaaataGAGAAATCATTGAGTTTCATTCTATAGGATTTTACAGTGATAAACAAGATGAATCCTAACCAAACAAAACTAAATACAGGATTCATAATGAATGGCAtatgaataaataaatagtagagatattaggctgcgtttacacaggtagcccaattctgatattttgcccaattattggctAAATATCTGATCTGATTAAAGACCAATTGgtgtaaaaaatatcagaattgggatacctgtgtaaacacagccttagaGGTGTTAGCAGCAACATATTTGTTTTGACACAAACTGTTTCCTTACATAGGACATTTCACAATTTCACCAATTGTTATTACTGTATGTGTAGTTATGTAGCCATTTGCTGTATGTTCTAAGTGTGGCATATACTGTTTTCAAATGCATCGGGAGAttatatgtgtatgtaaacttctgacccactggaattgtgatacagtgaaataagtgaaataacctgtctaggactggttaaatcaacagaaatctcataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13258 lncRNA upstream 236341 12460957 ~ 12466332 (+) True armh1
TU13243 lncRNA upstream 264879 12437565 ~ 12437794 (+) True G11140
TU13240 lncRNA upstream 268160 12433464 ~ 12434513 (+) True G11137
TU13233 lncRNA upstream 286641 12415311 ~ 12416032 (+) True G11130
TU13230 lncRNA upstream 291837 12410597 ~ 12410836 (+) True G11127
TU13543 lncRNA downstream 103901 12869398 ~ 12870186 (+) True G11422
TU13598 lncRNA downstream 173316 12938813 ~ 12939019 (+) True G11475
TU13617 lncRNA downstream 197063 12962560 ~ 13002364 (+) True G11494
TU13626 lncRNA downstream 208195 12973692 ~ 12998589 (+) True G11500
TU13666 lncRNA downstream 278338 13043835 ~ 13044050 (+) True G11539
XM_036943621.1 mRNA upstream 7378 12676733 ~ 12695295 (+) False LOC110536612
XM_021622382.2 mRNA upstream 7379 12682264 ~ 12695294 (+) False LOC110536612
XM_021622427.2 mRNA upstream 7379 12682264 ~ 12695294 (+) True LOC110536612
XM_021622393.2 mRNA upstream 7380 12682264 ~ 12695293 (+) False LOC110536612
XM_036943199.1 mRNA upstream 205911 12484686 ~ 12496762 (+) False LOC110536107
XM_021622671.2 mRNA downstream 24710 12790207 ~ 12802143 (+) True LOC110536960
XM_036944295.1 mRNA downstream 129917 12895414 ~ 12934612 (+) True LOC110537039
XM_021623210.2 mRNA downstream 246042 13011539 ~ 13016203 (+) True ptgfr
XM_021624163.2 mRNA downstream 268864 13034361 ~ 13047924 (+) False btf3l4
XM_036944948.1 mRNA downstream 268864 13034361 ~ 13047924 (+) False btf3l4
TU11995 other upstream 1188291 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2541387 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 2711131 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 2718209 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3242720 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 473116 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 863366 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 864539 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1426959 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1913853 14679350 ~ 14679578 (+) True G13380

Expression Profile