RNA id: XM_021625024.2



Basic Information


Item Value
RNA id XM_021625024.2
length 1045
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC110538273
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13117319 ~ 13118363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAACCTATGTCTATGACAGGAACACATCATCTGACTCTTCTGTCTATCTCTTGTAGGGCAGAGAAAACTCAGACCTGTCCTGCATTTGGGCTGGATTATGTTGTCATTAATCAAGACTATTAAATTGTATTTTAGCTGACACCATAAAATAATTAAGTAATATGCAATCCCCAAAATATCTGAATTCGACAGTATACAACATAAAGCCTGGAGAGATGGTCCTTCCCGATAAGAGCTCGGGGCCCAAAACGGTATTCGGGAAACGGCCCCAGATTCTCCCCTCCCCGGCTCTGTGCTGCGCCTGTGGCCTGTGCATTATGCTGGCGGGCATCAACATCACCCTGGTGGGGGCCTTTGCTTTCAAGTCCTTCATCCCCACCAGCAACCCACCCATCGTCATCGGACCCCTCCTCCTACTGGTGGCCCTGTCCTTTTTTGGggcgtgctgtgtgtgtgggcggcGGCCACCAACCCACAATGCCGGCAAGGCCAAGGGGGACGAGAGCTGGGGTCGGACGCGGATAGGGGCCGGCGTCACATTTGAGATGGAGACGAGCGAGCACACGCTGCAGGACACCACTGCTGTGCAGCTCAGTCCCACCAACTCTCAGAGCTCCTCCCACAAGTCTAGTAACTCCGCCCATGGGGATACCTCTGCAGTAGGGGCCTGTGAGGATGGCCCCGCCCCCATGTCCTGTGATCTCGCCAGCTCAGAGGCCTATGATATAGATGTGAGACCTGATGAACAGCTCTTGACCTCTGAGGACCAGCTCTTGACCTCTGAGGACCAGCTCTTGACCTCTGAGGACCAGCTTTTGACCTCTGAGGACCAGGCATTGACTGCTGATATTGAAGATAAGGGGAGCATCCAGATGACGGCACTATACAAGCCTTGCCCAACGTAGCATGGCTGTCTACTGGCTATTACATAAACTGGTACTATATCCTGTGTGACAATGACCTGTGTATCAATATatattgacttgcctagttaaataaaggttaaatatcccTCTGGTACTATAAACTggtactatatacagtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU13666 lncRNA upstream 73269 13043835 ~ 13044050 (+) True G11539
TU13617 lncRNA upstream 114955 12962560 ~ 13002364 (+) True G11494
TU13626 lncRNA upstream 118730 12973692 ~ 12998589 (+) True G11500
TU13598 lncRNA upstream 178300 12938813 ~ 12939019 (+) True G11475
TU13543 lncRNA upstream 247133 12869398 ~ 12870186 (+) True G11422
TU13702 lncRNA downstream 33641 13152004 ~ 13152991 (+) True G11574
TU13715 lncRNA downstream 63449 13181812 ~ 13182548 (+) True G11586
TU14193 lncRNA downstream 92101 13210464 ~ 13210813 (+) True G11999
TU14194 lncRNA downstream 92745 13211108 ~ 13211689 (+) True G12000
TU14196 lncRNA downstream 103018 13221381 ~ 13222041 (+) False LOC110526761
XM_021624280.2 mRNA upstream 1847 13104504 ~ 13115472 (+) True mknk1
XM_021624571.2 mRNA upstream 12731 13093674 ~ 13104588 (+) False LOC110537958
XM_021624652.2 mRNA upstream 12731 13093674 ~ 13104588 (+) False LOC110537958
XM_021624818.2 mRNA upstream 12731 13093674 ~ 13104588 (+) False LOC110537958
XR_002475701.2 mRNA upstream 12731 13093674 ~ 13104588 (+) False LOC110537958
XM_036945550.1 mRNA downstream 96408 13214771 ~ 13223903 (+) False LOC110526761
XM_036945729.1 mRNA downstream 141548 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA downstream 160048 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA downstream 160327 13278690 ~ 13295452 (+) False LOC110538561
XM_021556316.2 mRNA downstream 290919 13409282 ~ 13411290 (+) True LOC110485223
TU11995 other upstream 1602937 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 2956033 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3125777 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3132855 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3657366 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 120250 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 510500 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 511673 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 1074093 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1560987 14679350 ~ 14679578 (+) True G13380

Expression Profile