RNA id: XM_036945550.1


Basic Information

Item Value
RNA id XM_036945550.1
length 4344
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110526761
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13214771 ~ 13223903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTAGATGGCAACTCTCGGTATTCTCCAACGACTGGAGAGTGAGAGCACCGCGCGCAGAAAACGGACTACAGTATTCCTGAGGCGTTTGAGTTTAAAAAAATGAGTATACAGGACTAAACAGCACGGAATTGAGAAGTAATATACAAGGTGATACTTTGAAAGCTAATATTCCATTTGAAAACAGCCGGACATAGGCTATAGGCCAAGACCCCACGGGCAGCGTACGTAAGAGGTGACAGCAGCCATGCAGCACTACGGAGTGAATGGATATTCTCTCCACGCCATGAACTCACTAAATGCCATGTACAATCTTCACCAGCAGGCGGCGCAGCATGCCCAGCACGCGCCCGACTACCGGCCGTCCGTGCACGCGCTCACGCTGGCAGAGAGACTGGCTGACATAATCCTCGAGGCCCGGTATGGCTCCCAGCACAGGAAGCAGCGGCGCAGTCGCACAGCCTTCACTGCCCAGCAGCTGGAGGCCCTGGAAAAGACCTTCCAGAAGACCCACTACCCTGACGTGGTGATGCGCGAACGCCTGGCCATGTGTACCAACTTACCAGAGGCCCGTGTGCAGGTGTGGTTCAAGAACCGCCGCGCCAAGTTCCGCAAGAAGCAGCGCAGCCTGCAGAAGGAGCAGCTCCAGAAACAGACCAACAGAGAGGGAGGTGACGAGGAAGAGGTCAAGACCACCGACCCTTCCACCCagacatctccatctccatcctccctctcggAGACCATGCGGCCCCAGCCTGCGGAGATGAGTGTGGAGGTGAACGTCACCTCCCCGGAGGCCTCGGACAGCGAGTCGGCTGCAGAGGACAACGGTGAGGGAGATGAGGAGCtgaagtgggagaggctgcaggaTACTCATCAGTATCAGCATCAGGGGGAGGTGCAGCAGGGGGGTGCAGGGCTGCAGCCGGGAGGAGGATCTCCATCCTGCAAACGCTTCAGCCCCACACCAGactctccctccctcccctcctctagcGGTGGCAGCAGTTGTGTGTCCCAAGGCTCCTATGCCTCGTCCCCCCTCAGCCTCTTCCGTCTGCAGGAGCAGTTCCGCCAGCACATGGCTGCAACCAACAACGTGGTCCACTACCCCTCCTTCGACATGAGTACCCCCTCCTCCCTGCCCTACCTGGGCATGAACGTCAACATGCCCTCCCCCCTGGGCTCTCTGCCCTGCCAATCTTACTACCAGTCCCTGTCCCAGGCGTCCATGTCCCAAGTGTCCATGTCCCAGGCCCAGCAGGTGTGGAACAGCCCCTTGACGGGTCTCCAGGCCCCTCCGAGCAGCCTACCCAGCCTCAACAGCAAGACCACCAGCATCGAGAACCTGCGTCTGAGGGCCAAGCAGCACGCTGCCTCCCTGGGCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTAACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTAACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCCTGGACACGCTACCCAACTGACCCCcagactgaccccccccccccacagggcAGGGCAGCTAACTGGGACACAATCAGATGTTATGACCCTTTCTACTGACTGGACATTATAGACACTGCACCagtgtctacactacactacagtacactgggaCTGCACATTAGATAAGAACCCTACCGGACTATACTTATTTTGACACCCTTGCAGGTGAGATACATACACCCAGTGCAATCTcactactatactgaacaaaaatataaatggaacatgtaaagtgttggtcccatgtttcatgagttcaaataaaatatcccagaaatgttccatacgcacaaaaagcaaatttcatggtcaaatttgtttgcatccctgttaatgagcatttctcctttgccaagataatccatccacctgataggtgtggcatatcaagaagctgattaaaaagcatgatcattacacaggtgcatcttgtgctggggacaataaaaggtaactctaaaatgtgcagttttgtcacacaacacaatgccacagatgtctcaagttgagggagtgtgcaattggcatgctaactacAAGAATGTCCACTAGAGCGGTTGTCAGAGaattcaatgttaatttctctaccataagccacctcgaacattgttttagagaatctggcagtacgtccaaccggcctcacaaccgcaggccacgtgtaactacgccaacccaggacctccacatccggcttcttcacctgctggatcgtccgagaccagccacctggacagctgatgaaactgaggagtatttctgtctgtaattaaaGCTCTTTTGTGGTGAAAAAGTAATTCTGATTGgttaggcctggctccccagtgggtgggcctgactCCCAAGTGGTTGGGCCATTgccttcccaggcccacccatggctgcacccctgcccagtcatgggaaatcgatagattagggcccaatgaattgatttcaattgactgatttccttatatgaacagtaactgggtaaaatcgttgaaattgatGCATGTtcggtttatatttttgttcagtatacttcctACCAAACCAGCTTGATCAGACTTCAAATGCTACACTCCTAAATCACAAAGCCGTCATCTCACATGGGGCAAATGCATTATGGTcgtctacagtatatctgatgATCTCAACACTAGAAGTGGTGAGGGTGACCATAATATTAAAGATGAGCTTTGCATGCATCCTGAGACAGGGATTACAACAGCACAAAGATAGAAATGGTACAAAGATTGAATCAAGATTCCAGCCTCAGATGAAAACTCCCATTCAAACATTTACAACAGGACAGACCTGCCAGTTCAATAGCCTACAAATCCCACAATGCCCTGCACCTGGCAGAAGGACAGTACTTCCTGTTTTAGAGCTAcatccagagaggaagaggcgaagcaagaAGGTTCACtccgcccaaaatctgtccacgaaaACAAAACTAGGGAGacatttttgtatggaggtcaatgagtgttGAATTTGGTGAACAAAAaacacggccccatgttgcaaggatctgtacacaattcctggaagctgaaaatgtcccagttctcaccagacatgtcacgtattgagcatgtttgggatgttctggatcgacgtgtatgacagcaggttccagttcccgacaatatccagcaacttcgcacaaccattgtagaagagtgggacaacatatTTTACAGGTCACAagcagcctgatcaactatgGGAAAGagatgtcacgctgcatgaggcaaatggtggtcacaccagatactaggTTAATAGGTAATAGATAATAGGTTTTCTGATCtgtgcccctacctttttttaaggtatctgtgaccaacagatgcatatctgtattcccagtcatgtgaaacccatagattagggcctaatgaatttatttcaattgactgatttccttatatgaactgtaactgaaATGGTTGaattttgcatttatatttttgttcagtgtaactaCGCATCCCTCCCAAATACATGATAACTGTTAACACAATACACAATTAACTTTCCATGTTACGCAAACATGCACAGAGCTGAAGTCCCGGTTTCAGGACTGGTctcaaacagaacacacacacatagcccaTGTCACTTGTCCACCGAATGCAGAGTAACTAATCCTAAAGGAAATGACTGAAGCACAGTGTCAGGCTCTAAAGAGTCCCCAATCCCCTTCCTCCACGTCCCTTCTCGGCCCTGTCAGTCAAGGTTTGGCTGCACCGAAACAGAATGCTTTGCCATAAGAAGGATTACCTTGGGTTGGGATATCGATGGATTAAGTAAGAATAGAATAAGATGAAATAGAACTGAAAGGGTTCCTAGAGTTTACCATGGTCCACCCTCTCACTCCCTCAACCCATAAAATCAGAAATCTCTGTCCCACTTATGTAACGGAAGGATATCAAGTTGCAGAGTACATAAaaacgatttaaaaaaaatcaatacaAATAAAAACTTCCTCTGTCATTTCAAATCTTTTGTTGATATTAAAAATCCTGCCAGAGAAATATTGGGTTGTTCAAGCCTGTGATTATGTGGTCATGTTACGTTAATCAGTGGGGTTTGTGTATGTACACACATTTGTATATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14194 lncRNA upstream 3082 13211108 ~ 13211689 (+) True G12000
TU14193 lncRNA upstream 3958 13210464 ~ 13210813 (+) True G11999
TU13715 lncRNA upstream 32223 13181812 ~ 13182548 (+) True G11586
TU13702 lncRNA upstream 61780 13152004 ~ 13152991 (+) True G11574
TU13666 lncRNA upstream 170721 13043835 ~ 13044050 (+) True G11539
TU14204 lncRNA downstream 5872 13229775 ~ 13231234 (+) True G12007
TU14215 lncRNA downstream 18063 13241966 ~ 13242503 (+) True G12015
TU14211 lncRNA downstream 25241 13249144 ~ 13253343 (+) False G12014
TU14214 lncRNA downstream 25241 13249144 ~ 13253879 (+) False G12014
TU14213 lncRNA downstream 29159 13253062 ~ 13253879 (+) True G12014
XM_021625024.2 mRNA upstream 96408 13117319 ~ 13118363 (+) True LOC110538273
XM_021624280.2 mRNA upstream 99299 13104504 ~ 13115472 (+) True mknk1
XM_021624818.2 mRNA upstream 110183 13093674 ~ 13104588 (+) False LOC110537958
XM_036945729.1 mRNA downstream 36008 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA downstream 54508 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA downstream 54787 13278690 ~ 13295452 (+) False LOC110538561
XM_021556316.2 mRNA downstream 185379 13409282 ~ 13411290 (+) True LOC110485223
XM_021556420.2 mRNA downstream 201663 13425566 ~ 13431117 (+) True LOC110485322
TU11995 other upstream 1700389 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3053485 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3223229 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3230307 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3754818 9458948 ~ 9459953 (+) True LOC118966784
TU14216 other downstream 14710 13238613 ~ 13259996 (+) True LOC110538561
TU14679 other downstream 404960 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 406133 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 968553 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1455447 14679350 ~ 14679578 (+) True G13380

Expression Profile