RNA id: TU14216


Basic Information

Item Value
RNA id TU14216
length 1630
RNA type TUCP
GC content 0.38
exon number 4
gene id LOC110538561
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13238613 ~ 13295452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTTACTGTGGTGCACGTCTCACCTACTACAGTGTGTCAATGTAGTTCAAGTGTATGTGGCGATCAGTCACCAGTTGACATTGTTTGGTATCCAAATAATATTCTGAAACTCATTTGTTGCATTCACAAGTCTAAAATAACTATATACTTTTGCAGGCCTTGGGGCACGTTGGTCTTGACGAAGGGAATGGCGCCTTGTCTCTTCAGCACTTCAACTAGCACACTGTCCCCTGTGGCAGGCAGGTCCAATTTACAGATTACGCCACATGTAGAGTCATGACCCTtgtatccaatattttccttgatgCTGACAGGGACCCCATAAAGGAGACCATCCTTGTGAGAGTCAACATCCTCCAGCTGATCCCAACTTTCCAGCAGGACCTCAGTGCAACAGTTCAGTCTCCTATTCACCTCCAAGgtaaACTAATGCGTCTGGGAGAGAGCTTGACCAGGATGGAGCTATTCCTCTTCTTCACCTTCATACAGAGGTTTTTGTTCTCCATGCCGCCCAGAGTGAAGCCCGTGATGGGACGACAACTTTGGCATCACCCTGTCACCCGTTCCCCATGACATCTGTGCCACCCCGCACCAATGAGAGGGCACGGATCCATTGAGATGGCATGGTTTCTTCACGCCACAGTAACAGTTAACATAATTACATGAGATGTTTCACTCATCATCCATAAGCTCATAATAATCATACACCCTGTTTTGAACGGTCATGAGACAGTTATTTACATAGACGGTTAAAATGATCATTAGTCAGCCCATGTCTTGTTTTGCAGAAGATATTAAATTAGTATGATTAAGGTAAGTATAGATAAAAAGGACTTGCCTTGACTGACCTTTGAACTATATTCTGAACTCTGATTATATATCGTCAAGGTAGTATTTTGAATTTACCTGCCACCTTACAGGAGCAGAGTATGTTCAAGCTATAAAAAAAATAAGTAAAGTAAACACATTTTGTATACAATGTCTTCCAGAAATATAAtttccagtaaaaaaaaaatgaggaAAGAATTTGAATGCAATTCTAATACACCACTCTTACAATATAAACATCATGATGCACCAGATGGATGCTGGAATTCTCTCCACCTCTACTACCATATATTTCTTCAGTTAGAGTACAAAATATTTTAGACAGGCTTGACAAACAATGCTATTTATCTTCATCAACCAGTTCATGCAGGGCCTAGTCCTACACAAAGCACAAGGAATTCATATCAATCGTATTTTCTTGATTCCTTAAATTCTccctcctcgtctccttctcaagGCACATTCCTCCAATGTattttgagaaggaggcaaggagaCAGAACACAAGGAATCAACAAAATACAATAGAGATTCACCCAAGGCGTCTCATCGAGGCAAGGCACAGATTTTGAAGGGCTTTGGTCCACTGGTGATGCCCACCTGGCCCTCCAGGCCCAGCTCCCAGCCCTGTGGAGGTGTGAAGGTGAACCTCTGGAGCAGAAAGGTGAAGAACAGAAACAGCTCCATCCTGGCCAGCTGCTCCCCTGGACACATCCTCTTACCTGAGCGAGAgtagagcacacacacagatacctTTAACATGaggatggattgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14204 lncRNA upstream 7379 13229775 ~ 13231234 (+) True G12007
TU14195 lncRNA upstream 15098 13222931 ~ 13223515 (+) True LOC110526761
TU14196 lncRNA upstream 16572 13221381 ~ 13222041 (+) False LOC110526761
TU14194 lncRNA upstream 26924 13211108 ~ 13211689 (+) True G12000
TU14193 lncRNA upstream 27800 13210464 ~ 13210813 (+) True G11999
TU14229 lncRNA downstream 25246 13285242 ~ 13285464 (+) True G12029
TU14230 lncRNA downstream 25502 13285498 ~ 13285793 (+) True G12030
TU14234 lncRNA downstream 30731 13290727 ~ 13290927 (+) True G12034
TU14235 lncRNA downstream 31441 13291437 ~ 13291691 (+) True G12035
TU14206 lncRNA downstream 35577 13295573 ~ 13296966 (+) True G12009
XM_036945550.1 mRNA upstream 14710 13214771 ~ 13223903 (+) False LOC110526761
XM_021625024.2 mRNA upstream 120250 13117319 ~ 13118363 (+) True LOC110538273
XM_021624280.2 mRNA upstream 123141 13104504 ~ 13115472 (+) True mknk1
XM_021624571.2 mRNA upstream 134025 13093674 ~ 13104588 (+) False LOC110537958
XM_021624652.2 mRNA upstream 134025 13093674 ~ 13104588 (+) False LOC110537958
XM_036945735.1 mRNA downstream 18415 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA downstream 18694 13278690 ~ 13295452 (+) False LOC110538561
XM_021556316.2 mRNA downstream 149286 13409282 ~ 13411290 (+) True LOC110485223
XM_021556420.2 mRNA downstream 165570 13425566 ~ 13431117 (+) True LOC110485322
XM_036946195.1 mRNA downstream 176020 13436016 ~ 13441528 (+) True pdzk1ip1
TU11995 other upstream 1724231 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3077327 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3247071 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3254149 9983775 ~ 9984464 (+) False LOC110510920
TU9946 other upstream 3778660 9458948 ~ 9459953 (+) True LOC118966784
TU14679 other downstream 368867 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 370040 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 932460 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1419354 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 1419702 14679698 ~ 14680027 (+) True G13381

Expression Profile