RNA id: XM_021556316.2


Basic Information

Item Value
RNA id XM_021556316.2
length 1726
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110485223
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 13409282 ~ 13411290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGATCTGTGGTGGTTTGGTCTCTTGCGCATCAACTTGAGAAAGCCGACAGTGCATTATAAAGGGAGAACGGACAGTTCATTACAACGAAAGCGCCGCATATATTGGCCCAAAAATAacaaatctttttttttgtttttttgtccgGCCTTTGTCCGGTCTTACGCTGGAGCTGTAGAGGAAGAGATACGTTATGGGGGTGTTTATAACAGAGATACAGTACCTTACCTTCATCACAACTCCCCTGTCCTCGTATCATTGTGTAGCCTAGCAGGGACAGTGAGGCCATCACGCTAAACCATTATGACGGGTACGACAGATTTCAGCCATGCCATGGGCGATATTGAAACCAACGACGCCGATTACGAATATGATGAGGGTTATACAGACGAGGTCTGTAACAAGAACGGCGTTGTCAAGTTTGGCTCCATCGCCACCCCTGCCTTCTTCTCTGTGGTGACTATCCTGAGTCTAGCGGGCAACATCCTGGTCCTGGCCATCCTGGCCAAGTACGAGAACCTCAAGTCTCTCACCAACATCTTCATCCTCAACTTGGCCCTATCTGACCTGGTTTTCACCTTTGGTCTGCCCTTCTGGGCAGCCTACCACATCTGGGGCTGGACCTTTAGCCTGATCCTCTGCAAGACCGTTACCTTTGTCTTCTACGCTGGCTTCTACAGCAGCGTTTTGTTCCTGACCATCATGACTATCCACCGCTACCTGGCCGTGGTGCATCCTCTGTCCGACCATGGTTACCAAAGGGGCTGCTACGGGGTCACAGTCTCTCTCGTCATCTGGGTTGTTAGTTTTGTGGCGGCCGTCCCTGCTTTGATTTTCAGCTCTGTCCAAAAGAACCCCCATGAAGAAGACAACCATTTTTACTGTGAATACTGGGATCCGCTGTGGAAGAGAGTGGGCAGCTACCAACAGAACATCTTCTTCTTGGCTGCTTTTGCAGTGATCGGGTTCTGCTATGTGAGGATATTGAGGACAATCTTCAAGTCAAGGTCACACATGAGGAATCGAACCGTGAAGCTGATCTTCAGTATCGTGGCAGTATTTTTCATTGGCTGGGCGCCTTACAACGTAGTGATATTTCTGAGGTTGTTGACTGACTATTCCGTAGCACCTTTCAATACTTGTGAGGTCAGCACATGGCTTGACTATGGGTTCTATGTGTGTCGACTGATTGCTTTCTCCCACTGCTGTCTCAACCCTGTCTTCTACGCATTTGTTGGGATTAAGTTCAGAAATCACTTGAAGGTGATCTTGCTGAAGCTTTGCCATCGCCAAAGCACCATGGATACACAACAGATTAGATTGCCTAACATTTACTCGATGGGATCAATGTACTAGCACAGGGGTCTTCAATCTTTTCTTGCCCAGGGACCCACGCCAGGCAAACCGGCGACCCAAAATAAGTCACATCTTGTTAAATCAAAATCtaatttattggtcacatacacgtgtttagaagatattattgcgggtgtagtgaaatgcttgtgcttctagctctgacagtgcagtaatatttaacaagtaatatctaacagtttcacaacaactacccaaaatacacgtaaatctaagtaaggaatggattaagaatataAATATATGCCAGAGTGGCATTGGACTAAGATatcgtagaatagtatagaggacaGTTTATacctatgagatgagtaatgcactatttacacacaattaaagtgactaagat

Function

GO:

id name namespace
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14239 lncRNA upstream 106045 13303018 ~ 13303237 (+) True G12039
TU14237 lncRNA upstream 108433 13300630 ~ 13300849 (+) True G12037
TU14207 lncRNA upstream 111166 13297123 ~ 13298116 (+) True G12010
TU14206 lncRNA upstream 112316 13295573 ~ 13296966 (+) True G12009
TU14235 lncRNA upstream 117591 13291437 ~ 13291691 (+) True G12035
TU14351 lncRNA downstream 36974 13448264 ~ 13448757 (+) True G12126
TU14363 lncRNA downstream 64613 13475903 ~ 13477133 (+) True G12137
TU14593 lncRNA downstream 122654 13533944 ~ 13534149 (+) True G12332
TU14596 lncRNA downstream 124823 13536113 ~ 13536354 (+) True G12335
TU14603 lncRNA downstream 130163 13541453 ~ 13541669 (+) True G12342
XM_036945729.1 mRNA upstream 113830 13259911 ~ 13295452 (+) False LOC110538561
XM_036945735.1 mRNA upstream 113830 13278411 ~ 13295452 (+) False LOC110538561
XM_021625573.2 mRNA upstream 113830 13278690 ~ 13295452 (+) False LOC110538561
XM_036945550.1 mRNA upstream 185379 13214771 ~ 13223903 (+) False LOC110526761
XM_021625024.2 mRNA upstream 290919 13117319 ~ 13118363 (+) True LOC110538273
XM_021556420.2 mRNA downstream 14276 13425566 ~ 13431117 (+) True LOC110485322
XM_036946195.1 mRNA downstream 24726 13436016 ~ 13441528 (+) True pdzk1ip1
XM_036946379.1 mRNA downstream 323473 13734763 ~ 13753675 (+) True tm2d1
XM_021589094.2 mRNA downstream 729206 14140496 ~ 14144946 (+) True LOC110508285
XM_021556786.2 mRNA downstream 751095 14162385 ~ 14171600 (+) False LOC110485648
TU14216 other upstream 149286 13238613 ~ 13259996 (+) True LOC110538561
TU11995 other upstream 1894900 11476664 ~ 11514382 (+) True LOC110523899
TU10501 other upstream 3247996 10141244 ~ 10161286 (+) True gipc3
TU9934 other upstream 3417740 9985382 ~ 9991542 (+) True LOC110510920
TU10089 other upstream 3424818 9983775 ~ 9984464 (+) False LOC110510920
TU14679 other downstream 217573 13628863 ~ 13631288 (+) False G12410
TU14688 other downstream 218746 13630036 ~ 13631890 (+) False G12410
TU15077 other downstream 781166 14192456 ~ 14208014 (+) True LOC110486057
TU15838 other downstream 1268060 14679350 ~ 14679578 (+) True G13380
TU15839 other downstream 1268408 14679698 ~ 14680027 (+) True G13381

Expression Profile