RNA id: XM_021591303.2


Basic Information

Item Value
RNA id XM_021591303.2
length 4476
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110510003
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22655517 ~ 22696514 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCTAATCTGTTCCTGAGTTGTACACTGAAGCTAGAGGAGGGTATCCTCTGTTACTTTACTACCATAGGCCCCAGTCCTGGATTTGAACCTCTTTTAAGGGATGTTTTGGTCTTTATCTAAAGGAGGAATTACTGTTTTGATGCCAACACTGGTTCAGCATGAGGCCTTGTGAAGAACTGAACAGTCAAAGGTAGTTATTCGAAAACAATCATTATTGTTCCAGTCCAGGTATTGTTCAAAAGATTACTTGAACAACACCCTCCTCAGATTAGCAGAACAGGAACAAGAAACAGCGACAGCATAGCACCTGGAATACCAGAACACATAAGGAGCAGAACACCGGACCAAGGTGCCCAGAATTATGCCAATCTAGTCAGAATCACCTGAAGGATCTTACTGCAACAGTGCTGACTTGGCTGTAACGTCTCAGCGATAGCATGGCTGATCCTTACCAGAACAATGTGTACCACCAAGGAGGAGGTGACCCCTACGGCACCTACGGAGAGGGAGGAGACCAGGAGGGCTACGGTTACCAGGGCGAGTCCTACCCTCAGGAGGAGGATGCAGCCAGCGATGCCACGGAGGGCCATGATGACGAGGACCAGATGTACGAGGGGGAGTACCAGGGGATCCCCCACCCTGACGAGGTGAAGGCGGCCCAGAGGGCAGCGAGGGCCAAGgccaggcaggctcaggcagGGGCCACGGAGCTGGAGGAGCTGGCTGAGCAGTATGAGGACATCATGGAGGACTGTGGGCATGGACGGTTCCAGTGGAGCCTGTTTATAGTGCTGGGCCTAGCCCTCATGGCTGACGGGGTGGAGTGCTTTGTGGTGGGGTTCGTGCTGCCCAGCGCAGAGAAGGACATGTGCTTATCCAATGGAGAGAAAGGCATGCTAGgtTTGATAGTGTTCCTGGGCATGATGGTTGGGGCGTTCATCTGGGGAGGCATGGCAGACAAACTGGGCCGCCGGAAGTGTCTGATCTGGGCACTCACCATCAACTGTGTCTtcgccttcctctcctccttcgcCCAGGGATATGGCTTCTTTCTCTTCTTTAGGCTCATCTCCGGCATCGGTATTGGAGGTTCTGTCCCCATCGTCTACTCCTACTTCTCAGAGTTCCTTCAGATGGATAAGAGGGGGGAACACCTGAGCTGGCTGTGTATGTTCTGGATGGTGGGAGGCATCTATGCCTCCTTCACAGCCTGGGGCATCATCCCTCACTATGGCTGGGGCTTCAGCATGGGGACAGAGTTCCAGTTCCACAGCTGGAGGGTGTTTGTGCTGGTCTGTGCCCTGCCTGCCATCACCTCCCTGGTGGGGCTCATGTTCATGCCTGAgagccccaggttcctcctggagAATGCCAAACATGACGAGGCCTGGATGATCCTGAAGAATGTCCATGACACCAACTGGAGGGCAAAGGGCCAGCCTGAGAAGGTCTTCCAGGTGACACACATCAAGGCTCCTAAGACCCAGGAGGATGAGTTCATTGAGATCCAGAGTGCCACAGGGACGGCTATGCAGCGGTGGGCCGTCCGGACCCTCACTCTGTGCAAACTGGTGCTGAAGAACGTTGCTTCTCTCTTGGGACCTGAGCTGAGACTGAGTACACTGTTCATGGCAATCATCTGGTTCACCATGGCCTTcagTTACTATGGACTGGGTGTGTGGTTCCCTGACATGATCAAATACCTTCAGCAAGAGGAGTATGAGTCCAAAGTCAAGGTGttccacagagagagagtagaacgCTTCCACTTCAACTTCTCCCTGGAGAATCAGATCCACAGAGAGGGAGAATACATCAATGACAAGTTCATCAACATACAGATGAAGTCTGTTAAGTTTGAGGATTCACTGTTTGAAGATTGTTACTTTGAGGACATCGAGTCCACTGAAACAATATTTGAGAACTGTACCATCAGATCCACTGTCTTCTATAACACAGATCTGTATGAGGAAAGGTTCATAGACTGTAGGCTGGAGAACACCACATTCCTCCATAATAAGAAGGGTTGTCACTTGGACATCGACGAGGAGAACGATGTGCTCATCTACCTGGTCAGCTTCCTGGGGTCCCTGGCTGTTCTACCCGGCAACATCATATCAGCTCTGTTCATGGAGAAGATAGGCAGGGTTAAAATCATAGGCCTCTCCATGCTGATCTCAGCTGGCTGCACCTTCTTCCTGTTCCTGAGCTTCAGTCAGGCGGCCATCATAGCCTGGCAATGTCTGTTCTGTGGGGTCAGCGTGGCAGCATGGAATGGCATTGAGGTCATCACAGTGGAACTTTACCCAGCCTCCAAAAGAGCCACAGCGTTTGGGGTGTTGAATGCTCTCTGTAAGCTGGCGGCCATCCTGGGCACCTCCATTTTTGCCTCCTTTGTGGGGGTCACCAAAGTtgtccccatcctcctctcctgtacTGCTCTGGTGTGTGGAGGTCTGGTGGCCCTCAAGCTACCTGAGACCCGGGAGAAGATACTCCAGTGAGGAGGTCATACTGGCTAAAGGTCACAGGAGCAAGGAGCCACCTTTACAGGCGGAGTTCCTCTGGAAGACACACAGGCATTATGCAAGATTGGTTGTAACCACCTGGAGCTGACAAGAGTTTGTTCCACCAACATAGAGATCCTTTAATTACATGCTAACTAACAGTGTTCTTCATtgtctgttctgtctcattaGCTACGATGTGTTTGGAGTGAAATGCTTTAAAATCAACTCCAAAAATCAAAATTATTATTGGGATTAAATGGGAATATTTCTCTAATTCCTTATCTATTGGTCTAAAAACCATAGTTTGCCCCATTAATGTACGATATTGTCGACACAAGATAAGAATGGGAAAATATGTAAACCTCTTGATGGAGACTGGTAACCAGAAACAGATTTCTGGTCAAGGGAATCTTTCTCCAAtgccattttgaattcaggtacTTGTTTTAATCTTGGCCCTGCCTTAATGAATACTTATCAACTCAAACACTCTACCTTCTCTCCAAAATGTAAACTATATTGACTGTAGTGTAGCATTCCCTCCATGTATTCTCGTCTTGTGTTTCAATCAACCCACAGTATGTAGTGGGAGGACAGCAAATATCCTTCACCACATCTATACTGTATTTTTGAATCATTACCTTTAGTTGAGTGTTTGAGGTTATAGTCCATTAACAAGGGGTATATTCAGTAGGTTGCCATTTAGGGAACAGCATACAACTGCTATTTACTGCAGTATTCTCCATCAAATTTAGGAGATAACGTATTTGGCCGTTCCATTCTAATCTTATTTGCTGTCATGCTCTGAAAATGTAATCCTGCTGAATATGCACCTGCAATCAAACCAAAAAAATTGCATTCCAATTTTCCAATTGAAACTAACTTGCAACTTCATTCAGCAAACTGTTTGGTcctagagtgtgtttgtgtgcttgatGTAAATGTTCTCAGTTTCTCACTTGGGCTGTGGTTTATTTGTGTTGTCTATGCAACAACATCTTTAGTTTTTCTGTGGAAGTGGTACCACATAGGAATATGGGggaaaaaatgagttttaaaatATGTGGGGGAAATGCTCTTATTGGTGATAGGAGATTCACTGAAGCACACAGTGCTGTTTCTGCTAACTGTTGACTgagttgcatgtgtgtgttagtaaTGTTTCTGTGTCTTTCATGTGTTGTTCAAAAAGTAAGTCGTCTGAATGATGattgctgtctgtgtgtgtcactgtaAATAGCTGACTGGATTGTAGCCTGTACCGGCTTGAATTAACAATCACTTTAGTTAGTTTAAGCATTTCTTAGCTGTTTCTTGTCAAGTATTGTGGAGCCAATTGCATTTCTTTCCAATACAAAACAAGACTTTTGCCAATTATTTCTGTCATACTAACAATCTAACAGTTGCACAAACTGAAGCTTTGCTGTTGAAACACTATTTTGCATTTGACTATCCTTATTGTATCTACACTATATTCACACAATAACATATTTCAAAATAGAGAAAGCTACAAAACAAGAATAAAGGTGATGTTGCATCATCCTTTTTCAAAGTGTAGGTTTGGTTTCCTTTAGTCTATAGAACATCTGTACCATTATATGGAGGTATACATAATTATTTCCTATACATTGTGTAATACCTGTTATCAATTGAGTTGCAGGAAGAAATCAGCCTTAATTGAATGCGAGgattcaataaaacattttttcttTCTCAAGCATCTTTTTGAGCAGCAGCATCACTGTTATAAAGGGATTGGCTTATGGATACACTTCTTGGGTGCATTCATGTTTGTGTCTGCATCTTTGTGAAACAGAAAGCCATACTTTGTtctttgtttttatatttttatctcaaaatattgtctgtcgtggaaaaaaatattttgcatatattttttgttttgggGTTTTGTGACTGTGAAAAGatgaaacaaataaaataaatctatCAGTGTACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25686 lncRNA downstream 6501 22648781 ~ 22649016 (-) True LOC110532107
TU25680 lncRNA downstream 9839 22645454 ~ 22645678 (-) True G22133
TU25674 lncRNA downstream 18954 22636327 ~ 22636563 (-) True G22127
TU25663 lncRNA downstream 34192 22621125 ~ 22621325 (-) True G22116
TU25661 lncRNA downstream 37674 22617535 ~ 22617843 (-) True G22114
TU25728 lncRNA upstream 21844 22712533 ~ 22712738 (-) True G22181
TU26184 lncRNA upstream 355870 23046559 ~ 23046779 (-) True G22590
TU26187 lncRNA upstream 357814 23048503 ~ 23048740 (-) True G22593
TU26290 lncRNA upstream 439852 23130541 ~ 23130774 (-) True G22693
TU26499 lncRNA upstream 590614 23281303 ~ 23281631 (-) True G22901
XM_021615727.2 mRNA downstream 5924 22640169 ~ 22649593 (-) False LOC110532107
XM_021615713.2 mRNA downstream 15525 22639234 ~ 22639992 (-) True LOC110532100
XM_021590940.2 mRNA downstream 62872 22580312 ~ 22592645 (-) False LOC110509695
XM_021591764.2 mRNA upstream 224681 22915370 ~ 22956391 (-) False LOC110510264
XR_002471547.2 mRNA upstream 230878 22921567 ~ 22956391 (-) False LOC110510264
XR_002471552.2 mRNA upstream 230878 22921567 ~ 22956393 (-) False LOC110510264
XR_002471574.2 mRNA upstream 236665 22927354 ~ 22956392 (-) True LOC110510264
XM_021591923.2 mRNA upstream 630382 23321071 ~ 23619775 (-) False LOC110510575
TU25520 other downstream 273309 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 1107744 21535933 ~ 21547773 (-) True LOC110507736
TU23817 other downstream 1566267 21085468 ~ 21089250 (-) False LOC118945319
TU25921 other upstream 149156 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 933337 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1132011 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1532218 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 1861902 24552591 ~ 24553562 (-) True LOC110514811

Expression Profile