RNA id: XM_021605381.2


Basic Information

Item Value
RNA id XM_021605381.2
length 1389
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110525344
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 54282939 ~ 54297286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAACATTGTTCATATGCGACCAGCTCAAACTAGTTTCGAAAAAAAAAGTAGGACGACACAGTAAACGCAAGCTGTAGTCTGGGTGCGGAAAGCAAACGACTACACAACCGGTATAGTGATTTGACTGTGAAGTTGCCTGTTTGTGAGAATGAAAATGCAAGGTGTGTTCTCAATGACACTTGTGCTGCTTGTGGCCTTGATGGTCACAGCAGAAGCAGCACACAAACATGGTGACAAAAAAGGTCAGAAAGCCAAAGAGGGGGGCAAAGCAGAGTGTGCTGAGAAGCGCTTTGGCAAATGTGTGCCCAATGCTGGTGACTGTGGAGATGGGTTCCGTGAGGCCACCTGCAGTGAGCACACCACCAAACACAAGTGCAATATCCCCTGCAACTGGAAGAAGGCCTTTGGTGCTGACTGCAAGTACAGGTTCACCAATTGGGGTGAGTGTGACACGACCACCGGCACCAAGAGCCGGTCAGGAACCCTGAAGAAAGACCTGTTCAAGTTAGACTGCGAGGCCACCATCACGGTGACCAAGCCATGCTCCTCTAAGCCCAAGGGAAAGGGAGGAAAAGgGAAGAGGACAGAGTGACAACTAAAGAGTGAAGCTTGAGGACTGACTGAGACACAGCAGGTGTGACTTCTGGCTTACTTCAGCAGCACAATCGTCACCCTCCTTTGCCAAACACTCAGCCAGTGTCTCTGACTgtgtccaaaatgacaccctatctgttatatagtgcactactttagaccagagggccctggtcaaaagtagtgcaatatataaggaatagggtgtcatttgggatgtagcaTCTGTCTCTGCCGCTAAGCGCTTTGTCCttctcaaaacaacaacaacccaACAATCTCTGTCTATACACTCATGTTCATGTCTTTTCACGAAAACAATCTTGttatgtgtttttatttgttttaagggttaaaaaaaaatctttacatTCTTTTCAGTAGGAAACTTGACATATAAGTCAGTCTTCATAGTTTTAGGCCATCCTATGTTATTTTTAACAGAAAATGTAAAGAACTCAACTTCTATTGATAGTTGTAATAAAGCTATAGTTACAAAATTAAACATAAACAAACAACACTATGAACAAAATTATAATATTTCTTCAATGATCATGAATGTCGTTGACCATGTTCCAAGAAGCTCAGAAATACATATTTTAGAAGATTTTAGCGGAATCGTTTTTGTATGTGGATATGTGTACTGTCTATATCCTGGAAACAAATATTAGAATTCTATGGAACAATGGAACTCCtctgcaaaatgtatttttgaactATAGAAATGACTGGAATTGCAACACAAGGtttgtataaaataataaaatactgTACTGTTGTTTGTATAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65916 lncRNA upstream 97767 54184580 ~ 54185172 (+) True G59300
TU65915 lncRNA upstream 99560 54182981 ~ 54183379 (+) True G59299
TU65913 lncRNA upstream 101063 54181673 ~ 54181876 (+) True G59297
TU65912 lncRNA upstream 101313 54180605 ~ 54181626 (+) True G59296
TU65907 lncRNA upstream 110715 54172012 ~ 54172224 (+) True G59291
TU65999 lncRNA downstream 22043 54319329 ~ 54321609 (+) True G59378
TU66072 lncRNA downstream 121399 54418685 ~ 54424308 (+) True G59442
TU66089 lncRNA downstream 160094 54457380 ~ 54458833 (+) True G59459
TU66121 lncRNA downstream 207414 54504700 ~ 54505437 (+) True G59489
TU66100 lncRNA downstream 221098 54518384 ~ 54533275 (+) True G59468
XR_005051448.1 mRNA upstream 33727 54242821 ~ 54249212 (+) True LOC118964411
XM_036989711.1 mRNA upstream 193089 54044813 ~ 54089850 (+) False LOC110525327
XM_036980382.1 mRNA upstream 316436 53955795 ~ 53966503 (+) False LOC110525297
XM_036980387.1 mRNA upstream 316436 53955831 ~ 53966503 (+) False LOC110525297
XM_021605334.2 mRNA upstream 316436 53955904 ~ 53966503 (+) True LOC110525297
XM_021605445.2 mRNA downstream 123136 54420422 ~ 54444532 (+) True LOC110525380
XM_036980522.1 mRNA downstream 148169 54445455 ~ 54464444 (+) False adal
XM_021605511.2 mRNA downstream 148170 54445456 ~ 54464444 (+) False adal
XM_021605468.2 mRNA downstream 148170 54445456 ~ 54464446 (+) False adal
XM_021605493.2 mRNA downstream 148171 54445457 ~ 54464444 (+) False adal
TU65668 other upstream 220685 54044849 ~ 54062254 (+) False LOC110525327
TU65626 other upstream 294342 53988140 ~ 53988597 (+) True G59031
TU65446 other upstream 611666 53666215 ~ 53671273 (+) True LOC118936380
TU62774 other upstream 2832004 51449822 ~ 51450935 (+) True LOC110524575
TU60888 other upstream 4198943 50037574 ~ 50083996 (+) True LOC118964841
TU66625 other downstream 423902 54721188 ~ 54721463 (+) True G59963
TU67933 other downstream 1608222 55905508 ~ 55923376 (+) True G61202
TU68019 other downstream 1722190 56019476 ~ 56030371 (+) True G61284
TU68590 other downstream 1949298 56246584 ~ 56247770 (+) True G61804
TU68593 other downstream 1952602 56249888 ~ 56252015 (+) True G61806

Expression Profile