RNA id: TU710


Basic Information

Item Value
RNA id TU710
length 1024
RNA type TUCP
GC content 0.40
exon number 3
gene id G583
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1003783 ~ 1010207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgattacagacagcACTACATTCAAGTTTAATCAATATGATTACAGACAGCACTACATTCAAGTTTAATCAATATGATTACAGACAGCACTACATTCAAGTTTAATCAATATGATTACAGACAGCACTACATTCAAGTTTAATCAACATGATTACAGACAGCACTACATTCAAGTTTAATCAATAGTCCCAATATACTCTGAAagtacaaacattaggaacaccttcctaatattgagttgcacccttttTTGCCCTGAGAACCACCTTAAttagtcggggcatggactctactggGTGTccagcgttccacagggatgctggtccatgttgactccaatgcttcccacagttgtgccaagttgtctggatgtcctttgggtggtggaccattcttgatacacacaggaaactgttgggtgtgAAAAAtccagtagcgttgcagttcttgacacaaaccggtgcacctgccacctactaccataccctgaattcacctggtcggtctgtcatggaaagagcaggtgttcctaatgttttgtgcactcagtgtatgtgtgtggctgGATGATTCATGTAATGGTCGTAACTACAAGGTCTGTGAATAAAGGCTAATGAAATGTTTGGTATAACTCATGGGTTTAACGTGTCATATAATGgggagggggtggtggggggaggggggacaacTGTTGACTCCATACAGTTGTTCATTTTAAAGCTCTATGGCTTATCTCCTCCCCTATGCTGTACACCTTGGAAACCACACTCATCTGCTGGAGCCATCCAGAAGAACCAGGGGCAAGGTAGGGCCAGGGCAGGGCCAGCTGTAGCCAGGCAGGCCAGGCGAGGTAGGGCCAGGATAGGGCCAGCTGGAGCCAGGCAAGCCAGGCGAGGTAGGGCCAGGGAGGGCCAGCTGGAGCCAGGAAGGCCAGGCGAGGTAGGGCCAGGGCAGGGCCTGCTGTAGCCAGGCAGGTTgggccagggcagggggaggggaggtagggccagctggagccaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU596 lncRNA upstream 27674 975475 ~ 976109 (+) True slc9a7
TU604 lncRNA upstream 27784 970541 ~ 975999 (+) False slc9a7
TU825 lncRNA downstream 214887 1225094 ~ 1225527 (+) True G663
TU831 lncRNA downstream 234150 1244357 ~ 1245764 (+) True G669
TU836 lncRNA downstream 242807 1253014 ~ 1254747 (+) True G674
TU842 lncRNA downstream 257145 1267352 ~ 1268360 (+) True G678
TU843 lncRNA downstream 257189 1267396 ~ 1268081 (+) True G679
XM_036977980.1 mRNA upstream 31674 781840 ~ 972109 (+) False slc9a7
XM_021602630.2 mRNA upstream 386188 602103 ~ 617595 (+) True nit2
XM_036977245.1 mRNA upstream 506655 439966 ~ 497128 (+) False tbc1d23
XM_036978058.1 mRNA downstream 79189 1089396 ~ 1133908 (+) True tubgcp5
XM_036978346.1 mRNA downstream 163504 1173711 ~ 1298805 (+) False cyfip1
XM_036978398.1 mRNA downstream 163504 1173711 ~ 1299204 (+) False cyfip1
XM_036978300.1 mRNA downstream 163504 1173711 ~ 1299441 (+) False cyfip1
XM_036978109.1 mRNA downstream 163506 1173713 ~ 1300624 (+) False cyfip1
TU206 other upstream 683809 318047 ~ 319974 (+) False G166
TU83 other upstream 873520 120466 ~ 130263 (+) True G51
TU80 other upstream 883476 112959 ~ 120307 (+) True G50
TU55 other upstream 910065 56555 ~ 93718 (+) True G26
TU47 other upstream 931484 52711 ~ 72299 (+) True G19
TU1201 other downstream 1068691 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 1068691 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 1068691 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 1248676 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 1248676 2258883 ~ 2263565 (+) False G998

Expression Profile