RNA id: TU836


Basic Information

Item Value
RNA id TU836
length 554
lncRNA type intronic
GC content 0.37
exon number 2
gene id G674
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1253014 ~ 1254747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcttacctcatttgcacacactgtttatagactttttatattgtattattgactgtatgtttgttttactccatgtgtaactctgtgttgtttgtgctGCACTGCTTtggtttatcttggccaggtcgcagttgtaaatgggaacttgttctcaacttgcctacctggttaaataaaggtgaaattaattaATGAATTAAAAAACTGTGAAATATTTACTTACCCTTAACCATCAAAGCAGttcaagaaaatatttactgaataaacaaaagtaaaaaaaatataaaaagtaacagaataaaataaaaataacgaGGCTTTAGACAAgggctaccggtaccgagtcaatgtgtgggagtacaggttagtaatgaggctatatacaagggctaccggtaccgagtcaatgtgtgggagtacaggttagtaatgaggctatgtacaagggctaccggtaccgagtcaatgtgtgggagtacaggttagtaatgaggctttATACAAgggctaccggtaccgagtcaatgtgtgggagtacaggttagtaatgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU831 lncRNA upstream 7250 1244357 ~ 1245764 (+) True G669
TU593 lncRNA upstream 8861 975475 ~ 1244153 (+) False slc9a7
TU825 lncRNA upstream 27487 1225094 ~ 1225527 (+) True G663
TU695 lncRNA upstream 207760 988089 ~ 1045254 (+) True G571
TU709 lncRNA upstream 242807 1007382 ~ 1010207 (+) True G583
TU842 lncRNA downstream 12605 1267352 ~ 1268360 (+) True G678
TU843 lncRNA downstream 12649 1267396 ~ 1268081 (+) True G679
TU851 lncRNA downstream 54021 1308768 ~ 1309548 (+) True G683
TU808 lncRNA downstream 60660 1315407 ~ 1315653 (+) True G649
TU872 lncRNA downstream 81567 1336314 ~ 1348949 (+) True G696
XM_036978058.1 mRNA upstream 119106 1089396 ~ 1133908 (+) True tubgcp5
XM_036977980.1 mRNA upstream 280905 781840 ~ 972109 (+) False slc9a7
XM_021602630.2 mRNA upstream 635419 602103 ~ 617595 (+) True nit2
XM_036977209.1 mRNA upstream 755886 439967 ~ 497128 (+) False tbc1d23
XR_005051889.1 mRNA downstream 72575 1327322 ~ 1328266 (+) True LOC118964682
XM_021608164.2 mRNA downstream 79350 1334097 ~ 1398380 (+) True gabrb3
XM_036978985.1 mRNA downstream 205320 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA downstream 206746 1461493 ~ 1596619 (+) True atp10a
XM_036979059.1 mRNA downstream 478042 1732789 ~ 1770434 (+) False LOC110520782
TU710 other upstream 242807 1003783 ~ 1010207 (+) False G583
TU707 other upstream 243861 1003783 ~ 1009153 (+) False G583
TU206 other upstream 933040 318047 ~ 319974 (+) False G166
TU83 other upstream 1122751 120466 ~ 130263 (+) True G51
TU80 other upstream 1132707 112959 ~ 120307 (+) True G50
TU1201 other downstream 824151 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 824151 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 824151 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 1004136 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 1004136 2258883 ~ 2263565 (+) False G998

Expression Profile