RNA id: TU1056


Basic Information

Item Value
RNA id TU1056
length 402
lncRNA type intronic
GC content 0.38
exon number 2
gene id G836
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1767838 ~ 1768365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttattttcagcaaacttaacatgtgtaaatatttctatATGTACCCGTCTCTTGTTTTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTATTCTAACTCCTTCTACACCCCCTGATGTACCCGTCTCTTGTTTTCTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1042 lncRNA upstream 16627 1739281 ~ 1751211 (+) True G824
TU1001 lncRNA upstream 42018 1695529 ~ 1725820 (+) False G792
TU1006 lncRNA upstream 42018 1700764 ~ 1725820 (+) False G792
TU982 lncRNA upstream 42018 1707301 ~ 1725820 (+) True G792
TU1022 lncRNA upstream 43782 1711284 ~ 1724056 (+) True G805
TU1071 lncRNA downstream 42303 1810668 ~ 1811153 (+) True G848
TU1134 lncRNA downstream 128401 1896766 ~ 1897519 (+) True G901
TU1162 lncRNA downstream 209742 1978107 ~ 1978417 (+) True G927
TU1173 lncRNA downstream 242577 2010942 ~ 2044901 (+) True G938
TU1178 lncRNA downstream 250725 2019090 ~ 2019513 (+) True G943
XM_036978985.1 mRNA upstream 171219 1460067 ~ 1596619 (+) False atp10a
XM_036978913.1 mRNA upstream 171219 1461493 ~ 1596619 (+) True atp10a
XM_021608164.2 mRNA upstream 369458 1334097 ~ 1398380 (+) True gabrb3
XR_005051889.1 mRNA upstream 439572 1327322 ~ 1328266 (+) True LOC118964682
XM_036978261.1 mRNA upstream 467214 1193232 ~ 1300624 (+) True cyfip1
XR_005052028.1 mRNA downstream 91012 1859377 ~ 1966290 (+) False tmem131
XM_036979332.1 mRNA downstream 91013 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA downstream 91013 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA downstream 91049 1859414 ~ 1967576 (+) True tmem131
XM_036940834.1 mRNA downstream 215961 1984326 ~ 2098678 (+) False nme7
TU710 other upstream 757631 1003783 ~ 1010207 (+) False G583
TU707 other upstream 758685 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1447864 318047 ~ 319974 (+) False G166
TU83 other upstream 1637575 120466 ~ 130263 (+) True G51
TU80 other upstream 1647531 112959 ~ 120307 (+) True G50
TU1201 other downstream 310533 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 310533 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 310533 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 490518 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 490518 2258883 ~ 2263565 (+) False G998

Expression Profile