RNA id: TU1071


Basic Information

Item Value
RNA id TU1071
length 404
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G848
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1810668 ~ 1811153 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTGGCACCGCTAGGTTGCTATGCAATAGCATACCAGGGCTTTTGGCACCGCTAAGTTGCTATGCAATAGCAGACCAGGGCTTTTGGCACCGCTAGGTTGCTAGGCAGTAGCAGACCAGCAGGGCTCATGACCACACTAGAGAGATGGTGCGACACTGCGAGGTGGGTATACCTGGCCAGGGCTCCTGACCCTGTGAAGGAATCTCTGTGAGGCTCTGGGTGTCTGCTGGTTAACACAGAGACAGCACCCTGAATCTCTGACGAGGTGTCCTCACACTCTGAGTTGGACCTTAAAGAAATAGGAGATGGAGAGTGGGTCGTTAGGGAGAGAACATGACAGcagtgacatacagtatgtgtcctGTTGCCCAGAGGAcccaacagtagtacactatataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1056 lncRNA upstream 42303 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 59457 1739281 ~ 1751211 (+) True G824
TU1006 lncRNA upstream 84848 1700764 ~ 1725820 (+) False G792
TU982 lncRNA upstream 84848 1707301 ~ 1725820 (+) True G792
TU1022 lncRNA upstream 86612 1711284 ~ 1724056 (+) True G805
TU1134 lncRNA downstream 85613 1896766 ~ 1897519 (+) True G901
TU1162 lncRNA downstream 166954 1978107 ~ 1978417 (+) True G927
TU1173 lncRNA downstream 199789 2010942 ~ 2044901 (+) True G938
TU1178 lncRNA downstream 207937 2019090 ~ 2019513 (+) True G943
TU1185 lncRNA downstream 224703 2035856 ~ 2036555 (+) True G946
XM_036979059.1 mRNA upstream 40234 1732789 ~ 1770434 (+) False LOC110520782
XM_036979130.1 mRNA upstream 40234 1732794 ~ 1770434 (+) False LOC110520782
XM_036979098.1 mRNA upstream 40234 1732805 ~ 1770434 (+) False LOC110520782
XM_036979162.1 mRNA upstream 40234 1732805 ~ 1770434 (+) False LOC110520782
XM_036979236.1 mRNA upstream 40234 1736745 ~ 1770434 (+) True LOC110520782
XR_005052028.1 mRNA downstream 48224 1859377 ~ 1966290 (+) False tmem131
XM_036979332.1 mRNA downstream 48225 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA downstream 48225 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA downstream 48261 1859414 ~ 1967576 (+) True tmem131
XM_036940834.1 mRNA downstream 173173 1984326 ~ 2098678 (+) False nme7
TU710 other upstream 800461 1003783 ~ 1010207 (+) False G583
TU707 other upstream 801515 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1490694 318047 ~ 319974 (+) False G166
TU83 other upstream 1680405 120466 ~ 130263 (+) True G51
TU80 other upstream 1690361 112959 ~ 120307 (+) True G50
TU1201 other downstream 267745 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 267745 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 267745 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 447730 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 447730 2258883 ~ 2263565 (+) False G998

Expression Profile