RNA id: TU1178


Basic Information

Item Value
RNA id TU1178
length 214
lncRNA type intronic
GC content 0.50
exon number 2
gene id G943
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2019090 ~ 2019513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttaggtctttatgtagtgttgtcttaggtctccctctatgtagtgttgtcttaggttttTATGTAgtattgtcttaggtctctctttatgtagtattgtcttaggtctctctttatgtagtgttgtcgtaggtctctatgtagtgttgtcttaggtctctctttatgtagtgttgtcttaggtctctctctgtctagtgttgtcttaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1162 lncRNA upstream 40673 1978107 ~ 1978417 (+) True G927
TU1134 lncRNA upstream 121571 1896766 ~ 1897519 (+) True G901
TU1071 lncRNA upstream 207937 1810668 ~ 1811153 (+) True G848
TU1056 lncRNA upstream 250725 1767838 ~ 1768365 (+) True G836
TU1042 lncRNA upstream 267879 1739281 ~ 1751211 (+) True G824
TU1185 lncRNA downstream 16343 2035856 ~ 2036555 (+) True G946
TU1187 lncRNA downstream 23840 2043353 ~ 2043710 (+) True G948
TU1190 lncRNA downstream 30846 2050359 ~ 2050631 (+) True G951
TU1191 lncRNA downstream 43666 2063179 ~ 2063685 (+) True G952
TU1096 lncRNA downstream 57203 2076716 ~ 2077288 (+) True G864
XM_036979332.1 mRNA upstream 51514 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 51514 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 51514 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 52800 1859377 ~ 1966290 (+) False tmem131
XM_036979236.1 mRNA upstream 248656 1736745 ~ 1770434 (+) True LOC110520782
XM_036979903.1 mRNA downstream 157159 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 192622 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 192622 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 192623 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 192623 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 1008883 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1009937 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1699116 318047 ~ 319974 (+) False G166
TU83 other upstream 1888827 120466 ~ 130263 (+) True G51
TU80 other upstream 1898783 112959 ~ 120307 (+) True G50
TU1201 other downstream 59385 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 59385 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 59385 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 239370 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 239370 2258883 ~ 2263565 (+) False G998

Expression Profile