RNA id: TU1191


Basic Information

Item Value
RNA id TU1191
length 355
lncRNA type intronic
GC content 0.40
exon number 2
gene id G952
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2063179 ~ 2063685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaatagggtgccatagggaatagggtgccatagggaataggatgccatagggaacacaatgcaaatagtccgggtagccatttgattacctgttcaggagtcttatggcttgggggtaaaaactgttgagaagcctttttgtcctagacttggcactccggtaccgtttgccatgCGGTGATagagtgccagcatcggtttgtggagGTAATTAGACAGCTGCGAAAAATATAGACGAAAACTAGTGTGGTCTACAggttatcatgaggtattctaactcagacgagcagaaccttgagacttccttaatatgaGACACCAGTTGTTGTTAATATAGAGATACACACCCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1190 lncRNA upstream 12548 2050359 ~ 2050631 (+) True G951
TU1173 lncRNA upstream 18278 2010942 ~ 2044901 (+) True G938
TU1187 lncRNA upstream 19469 2043353 ~ 2043710 (+) True G948
TU1185 lncRNA upstream 26624 2035856 ~ 2036555 (+) True G946
TU1178 lncRNA upstream 43666 2019090 ~ 2019513 (+) True G943
TU1096 lncRNA downstream 13031 2076716 ~ 2077288 (+) True G864
TU1085 lncRNA downstream 34802 2098487 ~ 2101039 (+) False nme7
TU1086 lncRNA downstream 34802 2098487 ~ 2101039 (+) False nme7
TU1087 lncRNA downstream 34802 2098487 ~ 2101039 (+) False nme7
TU1088 lncRNA downstream 34802 2098487 ~ 2101039 (+) False nme7
XM_036979332.1 mRNA upstream 95603 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 95603 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 95603 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 96889 1859377 ~ 1966290 (+) False tmem131
XM_036979236.1 mRNA upstream 292745 1736745 ~ 1770434 (+) True LOC110520782
XM_036979903.1 mRNA downstream 112987 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 148450 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 148450 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 148451 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 148451 2212136 ~ 2258325 (+) False zbtb11
TU710 other upstream 1052972 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1054026 1003783 ~ 1009153 (+) False G583
TU206 other upstream 1743205 318047 ~ 319974 (+) False G166
TU83 other upstream 1932916 120466 ~ 130263 (+) True G51
TU80 other upstream 1942872 112959 ~ 120307 (+) True G50
TU1201 other downstream 15213 2078898 ~ 2079603 (+) False G961
TU1202 other downstream 15213 2078898 ~ 2079603 (+) False G961
TU1203 other downstream 15213 2078898 ~ 2079603 (+) True G961
TU1265 other downstream 195198 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 195198 2258883 ~ 2263565 (+) False G998

Expression Profile