RNA id: TU1078


Basic Information

Item Value
RNA id TU1078
length 433
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id G853
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2118911 ~ 2130795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtataaagcagtataacgcagtataaagcagtatgaAGCAGTATAAGGGGAGTAGAGCAGTCTTTACCTGGTGGGGCTACTCTGTCCTGGTAGGTGGGTTTGTAGTTACTAAGGGTTAGCAGCAGGGCCTGGATGGTCCCAATGAAAATCCCAGCCAAGCATCCATAGAAGATCAGGTAGAACAACAAGATTTTAACCAACTGCCACCAGTGCGTCCTAGAAATTCCTTCCTTTCCGAATTCCACAGAAAGCTCTTCCATCCACCGTTTCCATCTTTATTTGTCGACATATTTGTTTTGCCTTTTAATTTCCCTTTTCAATTAATATTATCTAATGGGTTTAGGTACCCGATTCCTGTACTGTCCCCCGCTACAGAATAGTAATGGACAATTTCGTACCCGGCTCTCCTATTGTCCGGCACACAATTTATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1085 lncRNA upstream 17872 2098487 ~ 2101039 (+) False nme7
TU1086 lncRNA upstream 17872 2098487 ~ 2101039 (+) False nme7
TU1087 lncRNA upstream 17872 2098487 ~ 2101039 (+) False nme7
TU1088 lncRNA upstream 17872 2098487 ~ 2101039 (+) False nme7
TU1089 lncRNA upstream 17872 2098487 ~ 2101039 (+) True nme7
TU1229 lncRNA downstream 5365 2136160 ~ 2136431 (+) True G980
TU1232 lncRNA downstream 9495 2140290 ~ 2140496 (+) True G983
TU1234 lncRNA downstream 11040 2141835 ~ 2142067 (+) True G985
TU1245 lncRNA downstream 35440 2166235 ~ 2166818 (+) True G996
TU1285 lncRNA downstream 47703 2178498 ~ 2179040 (+) True G1008
XM_036941267.1 mRNA upstream 20227 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 20233 1984326 ~ 2098678 (+) False nme7
XM_036941823.1 mRNA upstream 20233 1984326 ~ 2098678 (+) False nme7
NM_001160554.1 mRNA upstream 20450 1984574 ~ 2098461 (+) False nme7
XM_036979332.1 mRNA upstream 151335 1859378 ~ 1967576 (+) False tmem131
XM_036979903.1 mRNA downstream 45877 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 81340 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 81340 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 81341 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 81341 2212136 ~ 2258325 (+) False zbtb11
TU1201 other upstream 39308 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 39308 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 39308 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1108704 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1109758 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 128088 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 128088 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 513540 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1083902 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1372474 3503269 ~ 3503581 (+) True G2464

Expression Profile