RNA id: TU1221


Basic Information

Item Value
RNA id TU1221
length 2051
lncRNA type intronic
GC content 0.61
exon number 4
gene id G973
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2123545 ~ 2125928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttctctactctacactactctactgttctctacaccactctactgttctctactctacactactctactgttctctactctacaccactctattctacaccactctactgttctctacaccactcttctctacaccactccactgttctctacaccactccactgttctctacaccactccactgttctctacaccactccactattctctactctacaccactctactctacaccactctactgttctctacactactctactgttctctactctactgttctctactctacactactctactgttctctactctacaccactctattctacaccactctactgttctctacaccACCCCACTGTTCTCTACaccactccactgttctctacaccactctacaccactctactgttctctattctacaccactctactctactgttctctgctctactgttctctactctactgttctctactctacactactctactgttctctacaccactctactgttctctactctacactactctactgttctctactctacaccactctattctacaccactctactgttctctacaccactcttctctacaccactccactgttctctacaccactccactgttctctacaccactccactgttctctacaccactccactgttctctacaccactctactgttctctacaccactctacaccactcAACTGTTCTCTAATCTACACCACTCTACTGTTCTctgctctactgttctctactctactgttctctactctactgttctctactgttctctacaccactctactgttctctactctacaccattatactgttctctactctacaccactctactctactgttctctactctacactactctactctactgttctctgctctacaccactctactgttctctactctacaccactctactgttctctactctacaccactactgttctctactctacaccactctactgttctctactctacaccactctactgttctctactctacaccactctactgttctctactctacaccactctactgttctctattcTACACCAcgctactgttctctactctacaccactctactgttctctactctacaccactctactgttctctacaccactctactgttctctactctactgttctctactctacaccactctactgttctctactctacaccactctactgttctctactctacaccactctactgttctctacactactctactgttctatactctacaccactctactgttctatactctacaccactctactctacaccactctactgttctctactctacaccactctactgttctctactctactccataTGCTGTGTTGAAATTAATCTTGTCTCCCTCCCATGATGCAATAGTAACGGAGGGCAACATCACTTCTAGACTAGCAGGATGAGTCACTCTGGCTTGTTGTCGACGGTTAccagtccctctcctctatcAGCCTCATTTACAAACATCCCCAAACTCATACacacccccctccacacacacacacacacacacacacacatcacatggcGCCAtgcagtcaggcaggcagagacaggtGTGGCAAGACATGTTACTTTCTCTCCCTGCATGTGAAGGTGACAGGATGGCCGATAGTAAATCAACCCTGCTGCCCTTAACCTTGGGTCACAACAAAACATCCAGTGACTAAACAATCTACAGGAAACACTTTTACTAGTGCATTGTTTGAGCAGAATAACTTCATAGTGCAACAGTGTctgggtgcgtgtgtgtgagagggagggagagagactgattgaCTGGCGGTAACCATGGCAGTGAGCTctggggtgagagagactgattgacTGGCGGTAACCATGGCAGTGAGCTCTGGGGTGAGAGAGACTGATTGACTGGTGGTAACCATGGCAGTGAGCTctggggtgagagaaagagactgattgACTGGCGGTAACCATGGCAGTGACctctggggtgagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1219 lncRNA upstream 821 2119891 ~ 2122724 (+) True G971
TU1218 lncRNA upstream 2278 2119891 ~ 2121267 (+) False G971
TU1085 lncRNA upstream 22506 2098487 ~ 2101039 (+) False nme7
TU1229 lncRNA downstream 10232 2136160 ~ 2136431 (+) True G980
TU1232 lncRNA downstream 14362 2140290 ~ 2140496 (+) True G983
TU1234 lncRNA downstream 15907 2141835 ~ 2142067 (+) True G985
TU1245 lncRNA downstream 40307 2166235 ~ 2166818 (+) True G996
TU1285 lncRNA downstream 52570 2178498 ~ 2179040 (+) True G1008
XM_036941267.1 mRNA upstream 24861 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 24867 1984326 ~ 2098678 (+) False nme7
XM_036941823.1 mRNA upstream 24867 1984326 ~ 2098678 (+) False nme7
NM_001160554.1 mRNA upstream 25084 1984574 ~ 2098461 (+) False nme7
XM_036979391.1 mRNA upstream 155969 1859378 ~ 1967576 (+) False tmem131
XM_036979903.1 mRNA downstream 50744 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 86207 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 86207 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 86208 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 86208 2212136 ~ 2258325 (+) False zbtb11
TU1201 other upstream 43942 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 43942 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 43942 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1113338 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1114392 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 132955 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 132955 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 518407 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1088769 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1377341 3503269 ~ 3503581 (+) True G2464

Expression Profile