RNA id: TU1232


Basic Information

Item Value
RNA id TU1232
length 207
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G983
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2140290 ~ 2140496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaaaaaaaagagagccggaattcttactggttggtaggtgatcaaatacttatgtaatgcaataaaatgcaaattaattacttaaaaatcatacaatgtgattttctggatttttagattccgtctctcacagttgaagtgtacctatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1229 lncRNA upstream 3859 2136160 ~ 2136431 (+) True G980
TU1078 lncRNA upstream 9495 2118911 ~ 2130795 (+) True G853
TU1221 lncRNA upstream 14362 2123545 ~ 2125928 (+) False G973
TU1222 lncRNA upstream 14362 2123545 ~ 2125928 (+) True G973
TU1219 lncRNA upstream 17566 2119891 ~ 2122724 (+) True G971
TU1234 lncRNA downstream 1339 2141835 ~ 2142067 (+) True G985
TU1245 lncRNA downstream 25739 2166235 ~ 2166818 (+) True G996
TU1285 lncRNA downstream 38002 2178498 ~ 2179040 (+) True G1008
TU1290 lncRNA downstream 52858 2193354 ~ 2193717 (+) True G1013
TU1270 lncRNA downstream 81673 2222169 ~ 2226952 (+) True G1000
XM_036941267.1 mRNA upstream 41606 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 41612 1984326 ~ 2098678 (+) False nme7
XM_036941823.1 mRNA upstream 41612 1984326 ~ 2098678 (+) False nme7
NM_001160554.1 mRNA upstream 41829 1984574 ~ 2098461 (+) False nme7
XM_036979391.1 mRNA upstream 172714 1859378 ~ 1967576 (+) False tmem131
XM_036979903.1 mRNA downstream 36176 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 71639 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 71639 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 71640 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 71640 2212136 ~ 2258325 (+) False zbtb11
TU1201 other upstream 60687 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 60687 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 60687 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1130083 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1131137 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 118387 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 118387 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 503839 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1074201 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1362773 3503269 ~ 3503581 (+) True G2464

Expression Profile