RNA id: TU1290


Basic Information

Item Value
RNA id TU1290
length 250
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G1013
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2193354 ~ 2193717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGTACAGCAttgttcagttggtagagcacggttcagttggtagagcacggtgcaGTTGGTAGAGCCCGGTTCaattgcaacaccagggttgtgggtttgattcctatGGGGGGACCCCATGCATtccctactgtaagtcgctctggataagagtgtctgctaagtgTACAATGAGATGTTAGACCACAGGGTGAACCACAGACTCCAACACTGCAAGATGAAGGCAGCTCTGAGTAGCACCATGGAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285 lncRNA upstream 14314 2178498 ~ 2179040 (+) True G1008
TU1245 lncRNA upstream 26536 2166235 ~ 2166818 (+) True G996
TU1234 lncRNA upstream 51287 2141835 ~ 2142067 (+) True G985
TU1232 lncRNA upstream 52858 2140290 ~ 2140496 (+) True G983
TU1229 lncRNA upstream 56923 2136160 ~ 2136431 (+) True G980
TU1270 lncRNA downstream 28452 2222169 ~ 2226952 (+) True G1000
TU1269 lncRNA downstream 28883 2222600 ~ 2223908 (+) True G999
TU1272 lncRNA downstream 30318 2224035 ~ 2225731 (+) True G1002
TU1307 lncRNA downstream 32075 2225792 ~ 2228743 (+) False G1028
TU1306 lncRNA downstream 34202 2227919 ~ 2228743 (+) True G1028
XM_036979903.1 mRNA upstream 459 2176672 ~ 2192895 (+) True dpt
XM_036941267.1 mRNA upstream 94670 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 94676 1984326 ~ 2098678 (+) False nme7
XM_036941823.1 mRNA upstream 94676 1984326 ~ 2098678 (+) False nme7
NM_001160554.1 mRNA upstream 94893 1984574 ~ 2098461 (+) False nme7
XM_036980048.1 mRNA downstream 18418 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 18418 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 18419 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 18419 2212136 ~ 2258325 (+) False zbtb11
XR_005052094.1 mRNA downstream 18419 2212136 ~ 2258325 (+) False zbtb11
TU1201 other upstream 113751 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 113751 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 113751 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1183147 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1184201 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 65166 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 65166 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 450618 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1020980 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1309552 3503269 ~ 3503581 (+) True G2464

Expression Profile