RNA id: TU1272


Basic Information

Item Value
RNA id TU1272
length 904
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1002
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2224035 ~ 2225731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctgtctagtgttgtcttatgtctctctctctgtttagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgatgtcttaggtctctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctgtttagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctgtttagtgttgtcttaggtctctctgtctagtgttgtcttaggtctctctgtctagtgttgtcttagatctctctgtctagtgttgtcttaggtctctctctctctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgacttaggtctctctctctgtctagtgttgacttaggtctctctctctctctgtctagtgttgtcttaggtctctctctctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctctgtctagtgttgtcttaggtctctctctctgtctagtgttgtcttaggtctctctctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1269 lncRNA upstream 127 2222600 ~ 2223908 (+) True G999
TU1290 lncRNA upstream 30318 2193354 ~ 2193717 (+) True G1013
TU1285 lncRNA upstream 44995 2178498 ~ 2179040 (+) True G1008
TU1245 lncRNA upstream 57217 2166235 ~ 2166818 (+) True G996
TU1234 lncRNA upstream 81968 2141835 ~ 2142067 (+) True G985
TU1307 lncRNA downstream 61 2225792 ~ 2228743 (+) False G1028
TU1306 lncRNA downstream 2188 2227919 ~ 2228743 (+) True G1028
TU1310 lncRNA downstream 8802 2234533 ~ 2238220 (+) True G1030
TU1267 lncRNA downstream 33152 2258883 ~ 2263565 (+) False G998
TU1268 lncRNA downstream 33152 2258883 ~ 2305334 (+) True G998
XM_036979903.1 mRNA upstream 31140 2176672 ~ 2192895 (+) True dpt
XM_036941267.1 mRNA upstream 125351 1984326 ~ 2098684 (+) False nme7
XM_036940834.1 mRNA upstream 125357 1984326 ~ 2098678 (+) False nme7
XM_036980170.1 mRNA downstream 4342 2230073 ~ 2258325 (+) True zbtb11
XM_021615461.2 mRNA downstream 312603 2538334 ~ 2580308 (+) True LOC110531937
XM_036989274.1 mRNA downstream 1173695 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 1376932 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 1597405 3823136 ~ 3825865 (+) False LOC118965227
TU1201 other upstream 144432 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 144432 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 144432 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1213828 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1214882 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 33152 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 33152 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 418604 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 988966 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1277538 3503269 ~ 3503581 (+) True G2464

Expression Profile