RNA id: TU1267


Basic Information

Item Value
RNA id TU1267
length 4583
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G998
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2258883 ~ 2305334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGatatttttattgttttgtttatcaAAATAAGTACATTGTAACATTATTTACAATTCATTTTACAAAATTGTAGAACAGCAGATTACAGTACGAGGTTCTGCTTTCAATGTACCAATGACATACTAGGGTCATTCATGGCATGTTCATTCAGTGGTTATCACACTTTCAATATTGAAATTATATAAACTGTGTTTACGGCAACACTACACAGACCGCTTGTGAGAACAGTGACTTGTTGAGACCCCGATTTTTATTCATTTAAATGAATAGAAATAACCCGAACCCCTTTGTACCGTAATGTCTTTTAGCCATGCACTATTCTAAGTCCAaacctttttgtttgttttttttagtaAAAAATACATAACAGCATGTAGCTTTTAGAAAATAACTATACAAATGTATATACAATGATCTCAATAGTTTGGGCCATCTATCAAGTTAatctgtaacaacaacaacaacaacaacagtttaCAAAATGTGGTTCCAAAAATCCAGCAAGACAAATCAAAAGGAGCGTTTTGTAAGAAAAATGAAAAATGTAGCCCAGTAAATGTTCAACAGACCCACAAAATACAGACGGCGAGAACAAGCAGGCAATGAAATTCATCCCAAATGCCGCCCTATACTTTCGACCGTAGGGTgctatttttttgggggggggggggacaataccAAAGATGATCTGTAACAGTATTGTTATCGCCTCGAGGGCTATGAGAATGCAATTCTCATTCACGTAGAAATACAGTAAGTAGTTATAAACACGATAGTTTAACCAACACGAGGGTAGCAAAATTCCAGTCATTTCCCCAAGAGTTATAAACACGATTGAACTATTCCAGTAACTTCCTCCAAGAGTTATAAACACGATTGAACTATTCCAGTAACTTCCTCCAAGAGTTATAAACACAATGGTTTAACCAACAAAAGGATGACTAAATCCCCAGGTTTCTGAAAATCCTGGAAGCAGGAAGGTTAACACGATACAAGGCAGTAACTTGTTTTgtggtataaaaaaaaaagaaatcaaccaatccAACCTTTTTAAACAGCATTATTAATCACACTTTTCTCTGACACAAAGTAAAAATATGCATCTTGAAATGTATACAATCAAGACCGGCTTGTGACCAGCAGGCAAAAACAGTGTTGTGGACTAAAAACAGCAGGCGATCATGACAGTCCCGTCTAGAGCAACAGACCGGGATTCAACCCAAGGTGCGGTAAAGAACAGAGCAGCGCATTATACTTGTAATGGTAATTTGGGCTTGAGCTGAAGTGTGATATGAGTATTTTGTCATTTTTGGCCCGTATTTAGCGCAGTACCAATATGGCCACTAGAGGCCGCCACTCGCCAGTTGTGAGGTTACTTCCGGTGGCCGCACTATGGCAGTTGAGAAGTTTACCATCATCGGTCAACAGCACCGataaatacatatttattttGAAAGTAAGCGGGTGGAAAAGCACCATATTCAATTCAGTAATGTTTTCGGGAGGTCGTACATATGTTTTCACAAAACGTATGAAAAGTCCGCTAGCCTACAAGCTAATGTAGCTGGTAGCCCCATAGCAACACTAGCTTCCCTTAGTAACGGTCCTTGGCCTGTCGGGCGTCCGACATTGAGCATCATCAGCATTTGAGGAAATGCTTTGAAATCGATGAAAGTTGCTTCTCTGCCCCGTGGTGCGCTTGCTTTGCGTCAATTGTTGACGGTTCATTAGATCTTGTGAATTGAAATGCGAAAAAATAAAGTTACATTTGGTTTCATGTGGCCTCGACTTTATACACACACCACTGATTATTTTACTATGAGTTAAGAAGTCAAgaagctgctactacaacttgcTAGGTTCACAATGTAAACTAAAGCAacgtgtgagtgtgtatatatatatatatatatatatatatatatatatatagaggattGTTTATTTAGTATAACCACTAACAACAATGTAACGTTTTAATTTGGACCAAAGCCAAGGAGAAATGGCttgaatcgtgcaagctaacagacCATTAACGacacagtacaacagtggtgtgcagaacagcaTCTCGGAAACGCACAACGCGTCGGTCTTTGTCACGGATGGTTCTATTGCAACACCGGGTTCTACTCCCATCAGATAAGAACAAGAGGAAGAGGTTCCAGTGGGCAACAACACTGGACAATTTGAGGAGTGGAAACATCGCCTGGTCCGACGAATGCCGATTCCTGGTACGTGTGAtggcagtgTCAGGATTTGGCAGAAACTCATCGCCCCCccagtacaggctggtggcagtgTCAGGATTTGGCAGAAACTCATCGCCCCCccagtacaggctggtggtgtaaTGCTGTGGGGAATGTTTTACTGCCAGACGTTTAGGTctcttgataccaattgagcaacatttGAACACCACACAATCAATTTcccgaagaattcaggctgttctggaggcaaaaaGGGTCtgactagatgggtgtacctaataaactgtccactgAGTGTATATCCTGTTGTTTTGTTTTGCAATATTTGTGAATTTGTTTATAATTTATTTATGAAATGGTAGCAGTTGACAGATGTTTGCTAAGTGGGTCAACAGCAAGACAGAAGCACCTACATAGAAAAATGTATTTATCTTTATAATTTTGAAGGTCTCATCTGTCGTAACGCACTTTGGATTGGATCCTGGCCGTACACCTTCTACggcccaacaacaacaacaacaacaacaaaaggttTCCTCTCATAAAACCTATCAAAGCAAATCACAAAAAACATTTAAGAGTTTTTTGTCTCAAGAAATTAGATTTTTGTTTGTTGTATGAAATGTATCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAAACATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAAACATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAAACATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATCCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAATTTGTCTCATTCTCTAGCTGGCAGCTATGGAAGGCTTTCCTAAAACCATAAAATAAGTGCATTTTTATTTGCATAGTAGTTTTGCTATTTAGGATATCTGAACTAAGGACCAGGGTCCAGTTTCCCGCTAGCGATGTAAGTCAGGTCTTATGACGATGTACTTAGCTGGTCTGAGGCAGGTCGGTAAACAACTTCCAACAATGTTTTTTTGTGTTCTGCTCCAAAACGAGGGTTGTTCTAACAATGAACTTAGATGCTTTTGAGGAAACCGGACCCAGAGCACTTTGAAGCAGAGAATTCCTAGTTCTGTACCGTGATACGAGAGTGGTTGGTCAACAGGTGTGTGACAGAGGCAGGGCTTCAATCCAAGGCCCATTGCCGACAAGCGTACCGCACTCAACTTTTAATGATAACGTGCGCTTGAGCCGACATCCCCAGCGTTTACTGTAAAAGTGATCTCTGAACGTCAGGAAAATGGCCGTTTTACAGACCCATTGGTACAGTGCGCTTGTCAACAGTGCACCTTAGATTGAAATTCCATCCAGAGTGTGAGTTTTTCTATTCTCCCTCTTCCTTGATGCGCTGCTGCTTGTTGCGTCGGGAGTCCAGGTCGAAGGAGAAGTCGGACCAGTCGTCACGCGGAGGGAAGGAGATGGTCTGGCGCAGGGTGAAGCGCACGGCGTCGATGACCCGCTCGCCGCGGGCCTCGGAGGACCCTACGCTGACGGCGGAGGCCCCGCTGGAGGTACGCAGgatgtggggaggaggggagaactCCATGCTCTGCCGGTGCTCCATGATGCCCTTCCAGATGACGTGCTGGAACTCCTGCGGGATCTTCAGCCGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1310 lncRNA upstream 20663 2234533 ~ 2238220 (+) True G1030
TU1307 lncRNA upstream 30140 2225792 ~ 2228743 (+) False G1028
TU1306 lncRNA upstream 30140 2227919 ~ 2228743 (+) True G1028
TU1270 lncRNA upstream 31931 2222169 ~ 2226952 (+) True G1000
TU1356 lncRNA downstream 49588 2313153 ~ 2313914 (+) True G1069
TU1375 lncRNA downstream 72880 2336445 ~ 2338735 (+) True G1083
TU1379 lncRNA downstream 75875 2339440 ~ 2340422 (+) True G1085
TU1390 lncRNA downstream 94117 2357682 ~ 2358726 (+) True G1094
TU1413 lncRNA downstream 129229 2392794 ~ 2396261 (+) True G1115
XM_036980048.1 mRNA upstream 558 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA upstream 558 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA upstream 558 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA upstream 558 2212136 ~ 2258325 (+) False zbtb11
XR_005052094.1 mRNA upstream 558 2212136 ~ 2258325 (+) False zbtb11
XM_021615461.2 mRNA downstream 274769 2538334 ~ 2580308 (+) True LOC110531937
XM_036989274.1 mRNA downstream 1135861 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 1339098 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 1559571 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 1584058 3847623 ~ 3847694 (+) True trnap-cgg
TU1201 other upstream 179280 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 179280 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 179280 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1248676 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1249730 1003783 ~ 1009153 (+) False G583
TU2640 other downstream 380770 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 951132 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1239704 3503269 ~ 3503581 (+) True G2464
TU4120 other downstream 1911758 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 2135339 4398904 ~ 4399444 (+) True G3234

Expression Profile