RNA id: TU2722


Basic Information

Item Value
RNA id TU2722
length 244
lncRNA type intronic
GC content 0.40
exon number 2
gene id G2084
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 2782767 ~ 2784184 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacagtctgaccccgACCCatctgtctactaactactagttcatgtagggctacacagtctgaccctgctgtctactaactactagctcatgtaggactacacagtctgaccctgctgtctactaactactagttcatgtagggctacacagtctgaccctgctgtctactaactactagctcatgtagggcaaCacagtctgaccctgctgtctactaactactagatcatgtagggctacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2644 lncRNA upstream 126152 2648027 ~ 2656615 (+) True G2018
TU2620 lncRNA upstream 164205 2616569 ~ 2618562 (+) False G2004
TU2621 lncRNA upstream 164205 2616569 ~ 2618562 (+) False G2004
TU2625 lncRNA upstream 164205 2616569 ~ 2618562 (+) True G2004
TU2612 lncRNA upstream 164249 2616569 ~ 2618518 (+) False G2004
TU2698 lncRNA downstream 2634 2786818 ~ 2796573 (+) False G2068
TU2699 lncRNA downstream 2634 2786818 ~ 2798145 (+) True G2068
TU2903 lncRNA downstream 32106 2816290 ~ 2816626 (+) True G2223
TU2904 lncRNA downstream 40036 2824220 ~ 2824983 (+) True G2224
TU2905 lncRNA downstream 40935 2825119 ~ 2825476 (+) True G2225
XM_021615461.2 mRNA upstream 202459 2538334 ~ 2580308 (+) True LOC110531937
XR_005052094.1 mRNA upstream 524442 2212136 ~ 2258325 (+) False zbtb11
XM_036989274.1 mRNA downstream 615242 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 818479 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 1038952 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 1063439 3847623 ~ 3847694 (+) True trnap-cgg
trnap-ugg mRNA downstream 1063704 3847888 ~ 3847959 (+) True trnap-ugg
TU2640 other upstream 137598 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 519202 2258883 ~ 2263565 (+) False G998
TU1266 other upstream 519202 2258883 ~ 2263565 (+) False G998
TU1202 other upstream 703164 2078898 ~ 2079603 (+) False G961
TU3048 other downstream 430513 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 719085 3503269 ~ 3503581 (+) True G2464
TU4120 other downstream 1391139 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 1614720 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 1655782 4439966 ~ 4441908 (+) True G3351

Expression Profile