RNA id: TU3097



Basic Information


Item Value
RNA id TU3097
length 257
lncRNA type intronic
GC content 0.52
exon number 2
gene id G2381
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3305640 ~ 3306414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caccacaacaccacataaagagagacaccacaacaccacataaagagagacaccacaacaccacataaagagagacaccacaacaccacataaagagagacaccacaacactacataaagagagacctaagacaacattaTAACAAGGCAACAACATATGACAACatggtagcaacacacaacatggtagcaacacaacatggtagcaacacaacatggtagcagcacaacatggtagcagcacaacatggtagcaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU3088 lncRNA upstream 16256 3288957 ~ 3289384 (+) True G2374
TU3069 lncRNA upstream 41245 3263979 ~ 3264395 (+) True G2363
TU3042 lncRNA upstream 99978 3204704 ~ 3205662 (+) True G2340
TU3036 lncRNA upstream 115480 3189841 ~ 3190160 (+) True G2336
TU3002 lncRNA upstream 230697 3074499 ~ 3074943 (+) True G2304
TU3125 lncRNA downstream 51392 3357806 ~ 3360064 (+) True G2401
TU3174 lncRNA downstream 130854 3437268 ~ 3528661 (+) True G2440
TU3181 lncRNA downstream 146569 3452983 ~ 3454138 (+) True G2446
TU3194 lncRNA downstream 169995 3476409 ~ 3477347 (+) True G2459
TU3222 lncRNA downstream 240929 3547343 ~ 3547939 (+) True G2481
XM_021615461.2 mRNA upstream 725332 2538334 ~ 2580308 (+) True LOC110531937
XR_005052094.1 mRNA upstream 1047315 2212136 ~ 2258325 (+) False zbtb11
XM_036989274.1 mRNA downstream 93012 3399426 ~ 3400148 (+) True LOC118966170
XM_036981292.1 mRNA downstream 296249 3602663 ~ 3624582 (+) True bcl6aa
XR_005052490.1 mRNA downstream 516722 3823136 ~ 3825865 (+) False LOC118965227
trnap-cgg mRNA downstream 541209 3847623 ~ 3847694 (+) True trnap-cgg
trnap-ugg mRNA downstream 541474 3847888 ~ 3847959 (+) True trnap-ugg
TU3048 other upstream 89406 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 660471 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1042075 2258883 ~ 2263565 (+) False G998
TU1266 other upstream 1042075 2258883 ~ 2263565 (+) False G998
TU1203 other upstream 1226037 2078898 ~ 2079603 (+) True G961
TU3203 other downstream 196855 3503269 ~ 3503581 (+) True G2464
TU4120 other downstream 868909 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 1092490 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 1133552 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 1548107 4854521 ~ 4856248 (+) True G3596

Expression Profile