RNA id: TU3850


Basic Information

Item Value
RNA id TU3850
length 1297
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G2963
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3867734 ~ 3871079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTTTTGTAATAAGTCATGTTTATTCATGGTTAGGGACATGCTAAATCTCTATACAGTGGGAGTGGAGAACAAGCTCCGCTCCGAGTCGTTAACTAACCAGGTTctagcatagaaatagaatctatAGAAGGGGTCTCCCCATTCACGTCAGTGACGTCATAATGGGTGGGCTGGCAGCCATTAGGAGTGTACCCATAGGAGCACATGTACCCCACTAGTTTAGCAGTCAAAACTGCCAGATTTAGAGGTTCTAAGCCCTTTCTaaagattatatttctatggtattGCTGCTAGTCTGGGAAAGATTTGTCGGGAAATATTCACAAGCATGTCTATTAGTTTGAGGAGAGAAAATAAGCTGCAGTTTTGTTACAAGAACACCGACTGTGAAAGATGCATCTGTACAGCATTTTGACAGTTAAAAACCACGGAACACATTTGTCTCGTGAGAAAAGACCGAGTAAGATGACGTTGCTTGATTAACTACATTTAAACCTCAGGTTTGCATGAAGCATAAAATACCTatcctacagacagagagacagactacatGATCTACAGTACACCACACCTAATCAGGGATGGGCAGGCTGGCCTTCAGCCTCAATGTACAGCATGACCCAACTCATCTAGCAGTCGGCACATCACATTGGttgtccccccccaaaaaattgcatcctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactcttgaccagagccctatttcctatataatgcactactttagaccagagccctattccctatatagtgcactacttttgaccaagacctggaaagagggtgccatttgggacaaagacaCGACGTTCTCTCAAAGTTGCTGTGGCGTCGCAGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCAACATTAAAACATCGTCCCATCCACATTAAAACATCGTCCCATCTCAGGATTGTGACACTAACTATAGTCCTGCtatagtggagaggaggaggctgtACCCAGgtcaggagaggagagaacacactgtctctagtcctgttatagtggagaggaggaggctgtACCCAGGTCAggagaaaacaaaaaaacaaaaaccaacaagtgtacagtacaatagaaTTAATCAATCCCCCCTCACTGGTTTCTGGTGCAGCGGTATGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3842 lncRNA upstream 2459 3865001 ~ 3865275 (+) True G2958
TU3359 lncRNA upstream 41508 3822517 ~ 3826226 (+) True LOC118965227
TU3353 lncRNA upstream 53529 3813916 ~ 3814205 (+) True G2585
TU3329 lncRNA upstream 87056 3780289 ~ 3780678 (+) True G2570
TU3318 lncRNA upstream 103137 3756223 ~ 3764597 (+) True G2559
TU3862 lncRNA downstream 9816 3880895 ~ 3881979 (+) True G2971
TU3871 lncRNA downstream 23012 3894091 ~ 3894468 (+) True G2978
TU3874 lncRNA downstream 25509 3896588 ~ 3906272 (+) True G2979
TU3888 lncRNA downstream 60571 3931650 ~ 3931954 (+) False G2990
TU3889 lncRNA downstream 60571 3931650 ~ 3933618 (+) True G2990
XM_021616297.2 mRNA upstream 14725 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 19775 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 20040 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 41869 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 243152 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 1077648 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 1078312 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1793092 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1793092 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 1793092 5664171 ~ 5767693 (+) False LOC110526525
TU3203 other upstream 364153 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 651500 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 1222565 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1604169 2258883 ~ 2263565 (+) False G998
TU4120 other downstream 304244 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 527825 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 568887 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 983442 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 985446 4856525 ~ 4857065 (+) True G3597

Expression Profile