RNA id: TU3874


Basic Information

Item Value
RNA id TU3874
length 954
lncRNA type intronic
GC content 0.49
exon number 4
gene id G2979
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3896588 ~ 3906272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctgtagttagtagaacatggtcccctgtagctcagttagtagaacatggtcctctgtagttaatagaacatggtcctctgtagctcagttagtagaacatggtcctctgtagttcagttggtagagcatggtcctctgtagttcagttagtataacatggttctctgtagttcagttagtagaacatggtcctctgtagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagagcatggtcctctgtagttcagtgagtagaacatggtcatctgtagttcagttagtagaacatagtcctctgtagttcagttagtagaacatggttctctgtagttcagttggtagaacatggtactCTGTAGTTCAGtgagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagaacatggtcctctgtagttagtagagcatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttggtagaacatggtcctctgtagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggccctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatggttctctgtagttcagttagtagaacatggtcctctgtagttcagttagtagaacatgatcctctgtagttcagttagtagaacatggtcctctgtagttcagttagtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3871 lncRNA upstream 2120 3894091 ~ 3894468 (+) True G2978
TU3862 lncRNA upstream 14609 3880895 ~ 3881979 (+) True G2971
TU3850 lncRNA upstream 25509 3867734 ~ 3871079 (+) False G2963
TU3848 lncRNA upstream 25509 3867865 ~ 3871079 (+) False G2963
TU3849 lncRNA upstream 26307 3867865 ~ 3870281 (+) True G2963
TU3888 lncRNA downstream 25378 3931650 ~ 3931954 (+) False G2990
TU3889 lncRNA downstream 25378 3931650 ~ 3933618 (+) True G2990
TU3892 lncRNA downstream 31521 3937793 ~ 3938145 (+) True G2992
TU3904 lncRNA downstream 54962 3961234 ~ 3962364 (+) True G3002
TU3917 lncRNA downstream 73406 3979678 ~ 3982265 (+) True G3012
XM_021616297.2 mRNA upstream 43579 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 48629 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 48894 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 70723 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 272006 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 1042455 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 1043119 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1757899 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1757899 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 1757899 5664171 ~ 5767693 (+) False LOC110526525
TU3203 other upstream 393007 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 680354 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 1251419 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1633023 2258883 ~ 2263565 (+) False G998
TU4120 other downstream 269051 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 492632 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 533694 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 948249 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 950253 4856525 ~ 4857065 (+) True G3597

Expression Profile