RNA id: TU3917


Basic Information

Item Value
RNA id TU3917
length 315
lncRNA type intronic
GC content 0.38
exon number 4
gene id G3012
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3979678 ~ 3982265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcaggatgaggtaggtctacattaatctacagtggtcaggatgaggtaggtctaCATTCATCTACaatggtcaggatgaggtaggtctaCATTCATCTACaatggtcaggatgaggtaggtctacattcatctacagtggtcagaatgaggtaggtctacattcatctacagtggtcaggatgaggtaggtctacatttatctacagcagtcggtggtcaggatgagTTAGGTCTACATTcatctacagcagtcggtggtcaggatgaggtaggtctatagtcatctacagcagtcggtggtcaggatgaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU3904 lncRNA upstream 17314 3961234 ~ 3962364 (+) True G3002
TU3892 lncRNA upstream 41533 3937793 ~ 3938145 (+) True G2992
TU3889 lncRNA upstream 46060 3931650 ~ 3933618 (+) True G2990
TU3888 lncRNA upstream 47724 3931650 ~ 3931954 (+) False G2990
TU3874 lncRNA upstream 73406 3896588 ~ 3906272 (+) True G2979
TU3949 lncRNA downstream 55347 4037612 ~ 4040640 (+) True G3032
TU3950 lncRNA downstream 60608 4042873 ~ 4043357 (+) True G3033
TU3957 lncRNA downstream 71610 4053875 ~ 4054431 (+) True G3040
TU3960 lncRNA downstream 88894 4071159 ~ 4078757 (+) True G3043
TU3962 lncRNA downstream 90516 4072781 ~ 4075895 (+) True G3044
XM_021616297.2 mRNA upstream 126669 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 131719 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 131984 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 153813 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 355096 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 966462 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 967126 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1681906 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1681906 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 1681906 5664171 ~ 5767693 (+) False LOC110526525
TU3203 other upstream 476097 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 763444 3214697 ~ 3216234 (+) True G2343
TU2640 other upstream 1334509 2644335 ~ 2645169 (+) True G2016
TU1265 other upstream 1716113 2258883 ~ 2263565 (+) False G998
TU4120 other downstream 193058 4175323 ~ 4178073 (+) True G3176
TU4195 other downstream 416639 4398904 ~ 4399444 (+) True G3234
TU4331 other downstream 457701 4439966 ~ 4441908 (+) True G3351
TU4683 other downstream 872256 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 874260 4856525 ~ 4857065 (+) True G3597

Expression Profile