RNA id: TU4561


Basic Information

Item Value
RNA id TU4561
length 376
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id G3521
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4692248 ~ 4695358 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAACAGGATTGTAGCACTGCAGAGTCAAGGCGTTGTACTTAACAGCACAGGAGCCTATCACGTATAGTTTACCGTGGCAGGCAGTCGCTGTGAAGTTCGTGACGTATTTCACTGCAGGGCATGTTCGGGCCCAGGTGTCATTGTATGGGTCATAGTGCTCAATGTCTACAAAGTCCATTGTAGTGCCTCCGATGACGTATATCTCTCCGCTGAGGGCTGCTGAGGTGTGGTTAGTCCGGGGCCGGAGCATGGGAGCCACCGTCACCCACCGTCCCTCTCTGGTGATGTACTTCCAGGTCTCTGTGGTCGACCAGGTGTTGGATTGGGAACCCCTCGAGCCCCCtaagatgagagagggagggagggagggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4418 lncRNA upstream 65448 4588656 ~ 4626800 (+) True G3416
TU4430 lncRNA upstream 79469 4611590 ~ 4612779 (+) True G3427
TU4419 lncRNA upstream 98659 4592685 ~ 4593589 (+) True G3417
TU4372 lncRNA upstream 194057 4489992 ~ 4498191 (+) True G3377
TU4364 lncRNA upstream 202328 4482723 ~ 4489920 (+) False G3375
TU4564 lncRNA downstream 230 4695588 ~ 4700054 (+) True G3522
TU4618 lncRNA downstream 53000 4748358 ~ 4816025 (+) True G3540
TU4622 lncRNA downstream 66891 4762249 ~ 4762604 (+) True G3544
TU4647 lncRNA downstream 111663 4807021 ~ 4807264 (+) True G3569
TU4655 lncRNA downstream 119668 4815026 ~ 4820273 (+) False G3575
XM_021616297.2 mRNA upstream 839239 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 844289 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 844554 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 866383 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 1067666 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 253369 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 254033 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 968813 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 968813 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 968813 5664171 ~ 5767693 (+) False LOC110526525
TU4331 other upstream 250340 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 292804 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 514175 4175323 ~ 4178073 (+) True G3176
TU3203 other upstream 1188667 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 1476014 3214697 ~ 3216234 (+) True G2343
TU4683 other downstream 159163 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 161167 4856525 ~ 4857065 (+) True G3597
TU6645 other downstream 1822124 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 2115636 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 3029688 7725046 ~ 7725609 (+) True G6434

Expression Profile