RNA id: TU4711


Basic Information

Item Value
RNA id TU4711
length 741
lncRNA type intronic
GC content 0.44
exon number 2
gene id G3617
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4909131 ~ 4910563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagtcacactGGCCCAATAAAGGTGACCGTATGCTTCTGTTTGGAAGAGGTTGTGCACGTTTTGTGCACGTCTTGTGGCCGGTTTTGTTCGTTTTGGACTGTGATGAGGTTTTTTTTCGGGCTGTTCAGGCACACTACATGTTTTCTAGAGACAAGCTGAAGTCATTGTCCCTTCGTCTGTGATTGGGCAagagtagggattcttcaattaaatacaggagctataggagaatacaggagcaataggagaatacaggagatataggagaatacaggagatataggagaatacaggagatataagagaatacaggagatataggagaatacaggagatataggagaatacaggagatataggagaatacaggagatataggagaatacaggagctataggagaatacaggagatataggagaatacaggagaatacaggagctataggagaatacaggagaatacaggagctataggagaacacaggagaatacaggagctacaggagctataggagaatacaggagaatacaggagaatacaggagctataggagaatacaggagctataggagaacaCAGGAGATATAGTagaatacaggagaatacaggagctataggagaatacaggagaatacaggagaatacaggagctataggagaatacaggagctataggagaatacaggagctataggagaatacaggagaatacaggagctataggagaatacaggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4697 lncRNA upstream 24776 4883994 ~ 4884355 (+) True G3605
TU4691 lncRNA upstream 37189 4869971 ~ 4871942 (+) True G3601
TU4663 lncRNA upstream 80865 4827940 ~ 4828266 (+) True G3580
TU4658 lncRNA upstream 85973 4822066 ~ 4823158 (+) True G3576
TU4656 lncRNA upstream 88439 4816677 ~ 4820692 (+) True G3575
TU4733 lncRNA downstream 31902 4942465 ~ 4943847 (+) True G3639
TU4792 lncRNA downstream 174204 5084767 ~ 5085108 (+) True G3695
TU4834 lncRNA downstream 228566 5139129 ~ 5140516 (+) True G3725
TU5171 lncRNA downstream 274876 5185439 ~ 5185821 (+) True G3964
TU5179 lncRNA downstream 279867 5190430 ~ 5190635 (+) True G3972
XM_021616297.2 mRNA upstream 1056122 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1061172 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1061437 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 1083266 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 1284549 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 38164 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 38828 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 753608 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 753608 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 753608 5664171 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 52066 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 52883 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 467223 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 509687 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 731058 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1606919 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1900431 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2814483 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2974828 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 3126054 8036617 ~ 8037154 (+) True G6807

Expression Profile