RNA id: TU4834


Basic Information

Item Value
RNA id TU4834
length 1308
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G3725
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5139129 ~ 5140516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTGtctcacctctcctgtctcacctTTTCTGcctcacctctcctgtctcacctctcctgtctcactTCTCCTGTCTCACCTTTTCTGtctcacctctcctgtctcacctctcctgtctcagtcctttttctattacagtatatcactgtctaGTCACAGAACCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGATCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGATCCTTACTACTGGGAgtttacagtatatcactgtctaGTCACAGAACCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAACCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAGCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAGCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGATCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAGCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAACCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAGCCTTACTACAGGGAgtttacagtatatcactgtctaGTCACAGAGCCTTACTACAgggagactcacagctgtaatcactcttagagacttacccagaaagactcacagctcttagagacttacccagaaagactcacagctgtaatcactctgagagacttacccagaaagactcacagctgtaatcactcttagagatttacccagaaagacttacagctgtaatcactcttacagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaatcctcacagctgtaatcactcttagagacttacccagaaatactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatgactcttagagacttacccagaaagattcacagctgtaatgtctcttagagacttacccagaaatcctcacagctgtaatcactcttagagacttacccagaaagactcacagctcttagagactcaccctgaaatactcacagctgtaatcgctcttagagacttacccagatagactcacagctgtaatcactcttagagatttacccagaaatactcacagctgcaatcactcttagagatttacccagaaagactcacagctgtaatcgctgccaaaggtgattctaatatgtattgactcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4792 lncRNA upstream 54021 5084767 ~ 5085108 (+) True G3695
TU4733 lncRNA upstream 195282 4942465 ~ 4943847 (+) True G3639
TU4711 lncRNA upstream 228566 4909131 ~ 4910563 (+) True G3617
TU4697 lncRNA upstream 254774 4883994 ~ 4884355 (+) True G3605
TU4691 lncRNA upstream 267187 4869971 ~ 4871942 (+) True G3601
TU5171 lncRNA downstream 44923 5185439 ~ 5185821 (+) True G3964
TU5179 lncRNA downstream 49914 5190430 ~ 5190635 (+) True G3972
TU5243 lncRNA downstream 104299 5244815 ~ 5245184 (+) True G4025
TU5244 lncRNA downstream 105389 5245905 ~ 5246152 (+) True G4026
TU5250 lncRNA downstream 112941 5253457 ~ 5253796 (+) True G4032
XM_036983882.1 mRNA upstream 182043 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 182043 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1286120 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1291170 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1291435 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 523655 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 523655 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 523655 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 523656 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 523656 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 282064 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 282881 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 697221 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 739685 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 961056 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1376966 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1670478 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2584530 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2744875 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2896101 8036617 ~ 8037154 (+) True G6807

Expression Profile