RNA id: TU5250


Basic Information

Item Value
RNA id TU5250
length 340
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G4032
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5253457 ~ 5253796 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatcagtgattagttcattgactataattgcctttgaagtaagggatctaacattaagtagccctattttgagatgtgaggtatcaagatctctttcaataatgacaggaatggaggtggtctttatcctagtgagattgctaaggcgaacaccgccatgtttagttttgcccaacctaggtcgaggcacagacacggtctcaatggggatagctgagctgactacactgactgtgctagtggcagactccactatgctggcaggctggctaacagcctgctgcctggcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5244 lncRNA upstream 7305 5245905 ~ 5246152 (+) True G4026
TU5243 lncRNA upstream 8273 5244815 ~ 5245184 (+) True G4025
TU5179 lncRNA upstream 62822 5190430 ~ 5190635 (+) True G3972
TU5171 lncRNA upstream 67636 5185439 ~ 5185821 (+) True G3964
TU4834 lncRNA upstream 112941 5139129 ~ 5140516 (+) True G3725
TU5251 lncRNA downstream 132 5253928 ~ 5254214 (+) True G4033
TU5257 lncRNA downstream 9738 5263534 ~ 5263885 (+) True G4039
TU5276 lncRNA downstream 38571 5292367 ~ 5292590 (+) True G4057
TU5281 lncRNA downstream 47050 5300846 ~ 5301088 (+) True G4062
TU5285 lncRNA downstream 56759 5310555 ~ 5310794 (+) True G4065
XM_036983882.1 mRNA upstream 296371 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 296371 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1400448 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1405498 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1405763 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 410375 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 410375 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 410375 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 410376 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 410376 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 396392 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 397209 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 811549 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 854013 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1075384 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1263686 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1557198 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2471250 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2631595 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2782821 8036617 ~ 8037154 (+) True G6807

Expression Profile