RNA id: TU5477


Basic Information

Item Value
RNA id TU5477
length 360
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G4234
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5459034 ~ 5459441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTAGACAGATAGGTAGTCCAATACACTGTGGAGAACAGGGTGAACTAACTAGACATATAGGTAGTCCAACAGACTGTGGAGAACAGGGTGAACTAACTAGACAGATAGGTAGTCCAATACACTGTGGAGAACAGGGTGAACTAACTAGACAGATAGGTAGTCCAATACACTGTGGAGAACAGGGTGAACTAACTAGACAGATAGGTAGTCCAATACACTGTGGAGAACAGGGTGAACTAACTAGACTGACAGGTAGTCAAataattccctacttttcacactgacatGGTATAAATAGCTCTACAGGCATCACTGTCATggtcagtacacaacactatgctcatcatgtcttaTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5468 lncRNA upstream 8558 5450276 ~ 5450476 (+) True G4225
TU5449 lncRNA upstream 23862 5431338 ~ 5435172 (+) False G4209
TU5448 lncRNA upstream 25732 5431338 ~ 5433302 (+) False G4209
TU5450 lncRNA upstream 25732 5431983 ~ 5433302 (+) True G4209
TU5436 lncRNA upstream 38925 5419805 ~ 5420109 (+) True G4198
TU5481 lncRNA downstream 1988 5461429 ~ 5461628 (+) True G4238
TU5506 lncRNA downstream 17102 5476543 ~ 5476993 (+) True G4258
TU5585 lncRNA downstream 92702 5552143 ~ 5606891 (+) True G4320
TU5593 lncRNA downstream 111275 5570716 ~ 5571224 (+) True G4326
TU5597 lncRNA downstream 119923 5579364 ~ 5579784 (+) True G4330
XM_036983882.1 mRNA upstream 501948 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 501948 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1606025 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1611075 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1611340 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 204730 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 204730 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 204730 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 204731 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 204731 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 601969 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 602786 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1017126 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1059590 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1280961 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 1058041 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1351553 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2265605 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2425950 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2577176 8036617 ~ 8037154 (+) True G6807

Expression Profile