RNA id: TU5652


Basic Information

Item Value
RNA id TU5652
length 251
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G4373
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 5629938 ~ 5630253 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACTTTTCTGAGGCAACAACATCTCTGGAAAACTTCCACATAATTTCCAGGATTATCTGCTTCGATaaccgagacaccagaccagctcagcggcagagagacaagctagctgcaatcaggtcagtgcagagagacaagctagctgcaatcaggtcagtgcagagagacaagctagctgcaatcaggtcagtgcagagagacaagctagctgcaatcaggtcagtgcagagagacaagctagctgcaatcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5585 lncRNA upstream 23047 5552143 ~ 5606891 (+) True G4320
TU5597 lncRNA upstream 50154 5579364 ~ 5579784 (+) True G4330
TU5593 lncRNA upstream 58714 5570716 ~ 5571224 (+) True G4326
TU5506 lncRNA upstream 152945 5476543 ~ 5476993 (+) True G4258
TU5481 lncRNA upstream 168310 5461429 ~ 5461628 (+) True G4238
TU5659 lncRNA downstream 5081 5635334 ~ 5636741 (+) True G4378
TU5695 lncRNA downstream 27187 5657440 ~ 5658080 (+) True G4395
TU5759 lncRNA downstream 82969 5713222 ~ 5714024 (+) True G4436
TU5777 lncRNA downstream 125487 5755740 ~ 5756202 (+) True G4454
TU5782 lncRNA downstream 144042 5774295 ~ 5774817 (+) True G4459
XM_036983882.1 mRNA upstream 672852 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA upstream 672852 4949391 ~ 4957086 (+) True agxta
XM_021616297.2 mRNA upstream 1776929 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 1781979 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 1782244 3847623 ~ 3847694 (+) True trnap-cgg
XM_036984367.1 mRNA downstream 33918 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 33918 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 33918 5664171 ~ 5767693 (+) False LOC110526525
XM_036984485.1 mRNA downstream 33919 5664172 ~ 5767693 (+) False LOC110526525
XM_036984495.1 mRNA downstream 33919 5664172 ~ 5767693 (+) False LOC110526525
TU4684 other upstream 772873 4856525 ~ 4857065 (+) True G3597
TU4683 other upstream 773690 4854521 ~ 4856248 (+) True G3596
TU4331 other upstream 1188030 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 1230494 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 1451865 4175323 ~ 4178073 (+) True G3176
TU6645 other downstream 887229 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 1180741 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 2094793 7725046 ~ 7725609 (+) True G6434
TU8049 other downstream 2255138 7885391 ~ 7885907 (+) True G6518
TU8398 other downstream 2406364 8036617 ~ 8037154 (+) True G6807

Expression Profile